Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.6e-130 468.8 240 100.0
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.4e-88 330.1 202 85.6
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 3.0e-70 269.2 187 75.9
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.9e-69 266.5 202 71.3
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.4e-67 260.4 187 73.8
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 2.3e-67 259.6 166 82.5
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 4.0e-67 258.8 187 73.3
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 3.4e-66 255.8 190 74.2
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 7.6e-66 254.6 208 68.3
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 9.9e-66 254.2 164 81.1
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 9.9e-66 254.2 165 80.6
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 9.9e-66 254.2 184 76.6
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.4e-65 251.1 166 79.5
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.1e-64 250.8 164 78.7
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.1e-64 250.8 164 78.7
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.1e-64 250.8 166 78.9
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.1e-64 250.8 210 67.6
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.4e-64 250.4 163 81.0
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.9e-64 250.0 190 73.2
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.9e-64 250.0 153 85.0
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.4e-64 249.6 194 72.2
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 7.1e-64 248.1 179 74.9
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.2e-63 247.3 166 78.9
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.2e-63 247.3 209 67.0
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 1.6e-63 246.9 169 76.9
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 2.7e-63 246.1 175 76.0
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 3.5e-63 245.7 192 69.8
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 6.0e-63 245.0 202 68.3
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.0e-62 244.2 175 75.4
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.0e-62 244.2 175 75.4
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.3e-62 243.8 166 77.7
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 1.7e-62 243.4 215 61.9
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.7e-62 243.4 166 79.5
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.0e-62 242.7 168 74.4
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 3.0e-62 242.7 214 63.1
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 3.9e-62 242.3 166 77.7
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.1e-61 240.7 164 78.0
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.1e-61 240.7 164 77.4
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.1e-61 240.7 164 77.4
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 1.1e-61 240.7 193 67.4
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.5e-61 240.4 203 66.5
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.9e-61 240.0 194 71.1
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.9e-61 240.0 194 71.1
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 3.3e-61 239.2 169 74.6
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 4.3e-61 238.8 152 82.9
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 5.6e-61 238.4 171 76.6
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.2e-60 237.3 152 82.2
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.6e-60 236.9 140 87.1
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 1.6e-60 236.9 194 67.0
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.6e-60 236.9 202 66.3
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.1e-60 236.5 205 64.9
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.1e-60 236.5 152 81.6
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 2.8e-60 236.1 143 83.9
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 2.8e-60 236.1 259 55.6
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 2.8e-60 236.1 201 63.7
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 6.2e-60 235.0 200 66.0
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 8.1e-60 234.6 178 71.3
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.8e-59 233.4 216 61.6
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.8e-59 233.4 211 63.0
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 3.1e-59 232.6 192 67.7
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 4.0e-59 232.3 159 76.1
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 4.0e-59 232.3 177 71.2
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.2e-59 231.9 163 74.2
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 5.2e-59 231.9 218 62.4
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 6.9e-59 231.5 131 87.8
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 2.6e-58 229.6 165 75.8
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.4e-58 229.2 184 68.5
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 3.4e-58 229.2 228 56.6
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.2e-57 226.5 141 81.6
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 4.9e-57 225.3 171 70.2
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.1e-56 224.2 152 78.9
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.2e-56 222.6 200 64.0
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.2e-56 222.2 188 65.4
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 5.4e-56 221.9 130 86.2
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 9.3e-56 221.1 179 66.5
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.5e-55 219.2 203 62.6
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 7.8e-55 218.0 141 78.0
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 3.0e-54 216.1 162 69.1
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 3.9e-54 215.7 142 77.5
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 5.1e-54 215.3 140 77.9
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 5.1e-54 215.3 209 58.9
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 5.1e-54 215.3 165 70.3
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 6.6e-54 214.9 164 70.7
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 6.6e-54 214.9 143 76.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 6.6e-54 214.9 137 80.3
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.1e-53 214.2 137 79.6
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 1.1e-53 214.2 137 80.3
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.5e-53 213.8 148 75.7
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 2.5e-53 213.0 139 78.4
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 2.5e-53 213.0 141 76.6
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 3.3e-53 212.6 139 77.7
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 3.3e-53 212.6 139 77.7
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 3.3e-53 212.6 139 77.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 5.6e-53 211.8 135 80.0
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 7.3e-53 211.5 139 77.7
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 7.3e-53 211.5 164 70.1
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 9.6e-53 211.1 169 63.9
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 1.6e-52 210.3 135 78.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 8.1e-52 208.0 166 68.1
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 6.9e-51 204.9 149 73.8
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 6.9e-51 204.9 224 54.0
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 1.2e-50 204.1 210 59.0
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 1.5e-50 203.8 119 84.9
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.5e-50 203.8 156 71.8
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.5e-50 203.8 178 64.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.5e-50 203.8 142 76.1
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 2.0e-50 203.4 154 70.8
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.0e-50 203.4 153 68.0
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 7.6e-50 201.4 144 76.4
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 3.8e-49 199.1 153 68.0
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 4.9e-49 198.7 147 70.1
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 6.4e-49 198.4 160 67.5
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.4e-48 196.4 133 70.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.2e-48 196.1 137 73.7
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 2.7e-47 193.0 161 64.6
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 6.7e-46 188.3 190 54.7
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 5.6e-45 185.3 131 69.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-44 184.1 145 69.0
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.1e-43 181.0 124 75.0
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.8e-43 180.3 121 76.0
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.4e-43 179.9 164 62.8
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 9.0e-43 177.9 141 69.5
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 9.9e-42 174.5 124 69.4
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 2.2e-41 173.3 120 73.3
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 8.4e-41 171.4 143 68.5
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 5.5e-40 168.7 156 60.9
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.1e-40 168.3 131 67.2
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 7.1e-40 168.3 133 63.2
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.1e-39 166.8 151 60.9
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 7.9e-39 164.9 103 82.5
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 7.9e-39 164.9 169 56.2
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 1.0e-38 164.5 125 68.8
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 3.0e-38 162.9 156 58.3
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 6.7e-38 161.8 94 85.1
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.9e-37 160.2 106 80.2
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.9e-37 160.2 136 62.5
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 7.4e-37 158.3 101 78.2
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 2.8e-36 156.4 130 63.8
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.8e-36 156.4 151 57.6
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.2e-36 155.2 106 80.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.8e-35 153.7 105 75.2
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 4.5e-34 149.1 133 55.6
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 1.4e-32 144.1 143 57.3
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.8e-25 119.4 132 46.2
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 5.5e-24 115.5 149 45.6
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 1.3e-20 104.4 62 87.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.5e-16 90.1 93 58.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 4.2e-16 89.4 88 54.5
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 5.5e-16 89.0 154 37.0
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.5e-13 80.9 116 37.1
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.0e-09 68.2 51 62.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 8.0e-07 58.5 34 85.3
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 3.9e-06 56.2 35 74.3


User provided reference genes

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