Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.9e-155 551.2 299 100.0
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 3.8e-107 392.1 285 78.6
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.2e-106 388.7 286 77.3
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 7.9e-105 384.4 285 75.1
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 3.3e-103 379.0 289 73.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 4.3e-103 378.6 285 76.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.4e-103 377.9 288 76.7
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.8e-102 375.9 288 75.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.7e-102 375.6 285 74.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 4.8e-102 375.2 286 73.8
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.8e-102 375.2 286 74.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-101 374.0 285 77.9
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.1e-101 374.0 286 75.2
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.4e-101 372.9 285 75.4
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.4e-101 372.9 285 73.7
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 5.3e-101 371.7 285 74.4
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 5.3e-101 371.7 285 74.4
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.9e-101 371.3 285 76.5
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.5e-100 370.2 285 73.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.0e-100 369.8 288 72.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.6e-100 369.4 287 73.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.6e-100 369.4 289 73.0
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.4e-100 369.0 285 72.6
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.7e-99 366.7 316 69.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.7e-99 366.7 237 73.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.2e-99 366.3 295 73.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.2e-99 366.3 299 70.2
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 6.5e-99 364.8 285 72.3
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.4e-98 363.6 285 72.3
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.9e-98 363.2 285 73.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 4.2e-98 362.1 285 71.9
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.2e-98 362.1 285 71.9
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.5e-98 361.7 285 72.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-97 360.5 298 70.8
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 2.1e-97 359.8 287 72.5
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.0e-97 358.2 285 71.6
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.9e-97 357.8 285 70.2
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-96 357.5 285 70.2
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-96 357.5 285 71.2
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.0e-96 357.5 298 68.8
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-96 357.1 285 74.7
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.3e-96 356.3 285 70.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.9e-95 353.2 295 68.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.7e-95 351.7 285 70.9
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.7e-95 350.9 286 71.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.7e-94 349.0 286 71.3
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 8.2e-94 347.8 285 68.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.4e-93 346.3 288 71.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.4e-93 346.3 276 72.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.1e-93 345.9 289 70.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.1e-93 345.5 287 70.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 6.9e-93 344.7 286 71.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 5.9e-92 341.7 289 67.5
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 8.5e-91 337.8 292 68.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.4e-90 337.0 285 70.2
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.5e-90 336.3 285 67.4
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.5e-90 336.3 287 69.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.5e-90 336.3 285 70.2
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.1e-89 333.2 283 70.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.7e-89 332.8 239 67.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.6e-89 332.4 290 69.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 4.6e-89 332.0 281 69.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.1e-89 331.6 299 66.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 6.1e-89 331.6 235 67.2
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 6.1e-89 331.6 285 67.7
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 2.3e-88 329.7 285 68.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.7e-88 328.2 237 67.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.8e-88 327.8 290 68.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.9e-87 326.6 287 65.2
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.5e-87 326.2 289 68.9
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.5e-87 326.2 287 67.2
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 5.7e-87 325.1 286 65.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 9.7e-87 324.3 285 68.4
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.3e-86 323.9 285 67.4
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 8.2e-86 321.2 242 66.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 9.1e-85 317.8 288 66.0
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.5e-84 317.0 289 65.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 2.0e-84 316.6 210 74.3
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.5e-84 315.5 243 65.0
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.5e-84 315.5 243 65.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.3e-83 313.9 239 64.4
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.7e-83 313.5 291 66.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.5e-83 311.6 289 65.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.2e-82 308.9 237 65.8
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 5.5e-82 308.5 210 70.0
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 5.5e-82 308.5 287 65.2
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.2e-82 308.1 272 58.8
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.2e-81 307.4 240 65.0
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.1e-81 306.6 240 76.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.6e-81 305.8 315 62.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 3.6e-81 305.8 358 55.9
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 4.7e-81 305.4 240 63.8
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.7e-80 301.6 234 62.0
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 8.8e-80 301.2 286 63.3
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.6e-79 299.7 230 76.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.3e-79 299.3 304 60.5
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.3e-79 299.3 240 62.9
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.7e-78 297.0 240 62.9
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.7e-78 295.8 302 63.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 3.1e-77 292.7 285 64.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.5e-76 290.4 276 64.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 3.5e-76 289.3 217 62.2
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 5.9e-76 288.5 304 62.5
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.0e-75 287.7 285 62.5
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-75 287.3 235 62.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.8e-75 285.8 294 62.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-74 284.3 304 61.5
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 9.4e-74 281.2 232 71.6
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 9.4e-74 281.2 235 59.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.8e-72 276.9 194 72.2
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 5.2e-72 275.4 305 61.0
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 5.2e-72 275.4 307 60.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-70 270.0 244 59.4
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.8e-70 268.9 235 59.1
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 4.1e-69 265.8 247 59.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 5.3e-69 265.4 191 66.0
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 9.1e-69 264.6 245 59.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 4.5e-68 262.3 242 59.5
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.3e-67 260.8 229 69.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 2.9e-67 259.6 235 57.0
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.8e-67 259.2 296 57.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.5e-66 257.3 243 58.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 7.2e-66 255.0 288 59.4
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.8e-64 250.4 232 58.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.1e-61 239.6 231 54.5
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 2.9e-59 233.0 217 55.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.9e-58 230.3 195 59.5
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.4e-55 219.5 241 50.2
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.5e-55 218.4 238 52.1
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-52 211.1 238 50.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.4e-48 197.6 232 45.7
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.3e-43 181.0 149 61.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-41 174.5 248 54.8
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.8e-32 144.1 131 57.3
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.8e-31 139.0 240 35.8
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 4.3e-26 122.9 254 31.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 4.7e-25 119.4 245 36.3
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.4e-23 113.2 238 32.4
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-22 111.3 224 35.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 6.4e-22 109.0 225 34.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 6.4e-22 109.0 228 34.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-20 104.8 226 35.4
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.5e-20 103.2 224 33.5
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.0e-19 101.7 170 42.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.0e-19 100.1 231 33.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 8.6e-19 98.6 223 32.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 8.6e-19 98.6 234 32.1
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.9e-18 97.4 229 31.4
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.3e-18 96.3 225 33.8
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.6e-17 94.4 241 31.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-17 94.0 238 33.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.6e-17 93.2 245 29.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 8.1e-17 92.0 234 32.5
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.1e-16 91.7 201 33.3
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.0e-16 89.7 161 34.2
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.8e-16 89.0 224 31.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 4.4e-15 86.3 252 30.2
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.9e-14 82.8 200 33.0
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 2.4e-13 80.5 51 74.5
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.3e-11 74.7 242 28.9
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.9e-11 73.2 49 63.3
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 5.1e-11 72.8 54 63.0
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.1e-10 71.6 166 33.1
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-10 70.9 100 42.0
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.5e-10 70.5 174 31.0
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 9.6e-10 68.6 185 34.1
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.6e-09 67.8 170 31.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.4e-08 64.7 249 25.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-07 61.6 49 59.2
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 7.6e-07 58.9 51 47.1
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 1.7e-06 57.8 169 27.8
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 4.9e-06 56.2 259 24.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.4e-06 55.8 182 28.6
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.4e-06 55.5 37 56.8


User provided reference genes

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