Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.0e-94 348.6 189 100.0
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 3.8e-36 155.6 205 50.2
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 9.3e-35 151.0 183 47.5
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 9.3e-35 151.0 187 50.8
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 2.3e-33 146.4 185 48.6
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 1.9e-32 143.3 197 49.7
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 4.3e-32 142.1 196 46.9
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.1e-31 139.8 206 42.7
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 4.8e-31 138.7 174 54.0
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.1e-30 137.5 168 53.0
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-30 137.1 198 43.9
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 1.2e-29 134.0 181 47.5
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.6e-29 132.9 199 43.2
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 3.4e-29 132.5 191 49.2
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.6e-29 131.3 199 44.2
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 7.6e-29 131.3 183 48.6
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 7.6e-29 131.3 194 46.4
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.9e-28 129.4 185 46.5
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.1e-27 127.5 182 46.2
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.1e-27 127.5 203 43.8
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 9.3e-27 124.4 187 46.5
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 1.2e-26 124.0 204 43.1
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.1e-26 123.2 190 45.3
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 7.9e-26 121.3 156 52.6
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.3e-25 120.6 195 41.5
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.3e-25 120.6 182 45.6
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.3e-25 120.6 186 42.5
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.8e-25 120.2 201 44.8
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.8e-25 120.2 180 42.2
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 8.7e-25 117.9 187 41.7
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.1e-24 117.5 188 43.1
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 7.4e-24 114.8 157 43.3
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 9.6e-24 114.4 186 46.2
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 9.6e-24 114.4 158 44.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.3e-23 114.0 188 40.4
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 2.8e-23 112.8 207 37.7
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 3.7e-23 112.5 119 48.7
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 8.1e-23 111.3 187 39.0
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 1.1e-22 110.9 161 41.6
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.1e-22 110.9 199 42.2
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.4e-22 109.8 208 38.0
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.4e-22 109.8 209 38.8
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.1e-22 109.4 179 42.5
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.3e-22 108.6 186 43.0
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 6.9e-22 108.2 188 39.4
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 6.9e-22 108.2 185 42.2
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 9.0e-22 107.8 184 39.1
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 9.0e-22 107.8 201 40.3
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.2e-21 107.5 194 39.2
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.5e-21 107.1 195 41.0
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 2.0e-21 106.7 203 38.4
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.0e-21 106.7 181 41.4
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 2.6e-21 106.3 203 38.4
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.6e-21 106.3 164 42.1
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 2.6e-21 106.3 162 42.0
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 5.8e-21 105.1 141 45.4
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 7.6e-21 104.8 150 42.7
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 7.6e-21 104.8 201 36.8
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 9.9e-21 104.4 183 40.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.3e-20 104.0 112 51.8
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.3e-20 104.0 147 42.9
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.2e-20 103.2 181 43.1
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 2.9e-20 102.8 177 41.2
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 2.9e-20 102.8 140 42.9
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 3.8e-20 102.4 166 41.0
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.8e-20 102.4 191 40.8
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 4.9e-20 102.1 199 36.7
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 8.4e-20 101.3 202 36.6
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 8.4e-20 101.3 202 36.6
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.4e-19 100.5 158 44.9
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.9e-19 100.1 167 38.9
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 3.2e-19 99.4 200 36.5
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.2e-19 99.4 98 55.1
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.2e-19 99.4 98 55.1
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.2e-19 99.0 206 36.9
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 5.5e-19 98.6 203 36.0
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 7.1e-19 98.2 193 35.2
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 1.2e-18 97.4 167 41.3
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.2e-18 97.4 187 40.1
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.6e-18 97.1 194 41.2
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 2.1e-18 96.7 195 36.4
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 2.1e-18 96.7 201 34.8
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 7.9e-18 94.7 169 40.2
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 5.1e-17 92.0 202 34.2
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 5.1e-17 92.0 202 34.2
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 5.1e-17 92.0 157 40.1
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.7e-17 91.7 191 39.3
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 8.7e-17 91.3 202 33.7
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.1e-16 90.9 142 46.5
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 1.5e-16 90.5 172 38.4
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 4.3e-16 89.0 111 49.5
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 4.3e-16 89.0 111 49.5
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 7.4e-16 88.2 197 34.0
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.3e-15 87.4 83 53.0
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.6e-15 87.0 189 37.6
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 2.1e-15 86.7 178 33.7
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.8e-15 86.3 202 34.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 2.8e-15 86.3 202 32.7
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 4.8e-15 85.5 199 34.2
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 6.2e-15 85.1 199 33.7
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.8e-14 83.6 112 49.1
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 5.3e-14 82.0 180 37.2
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 6.9e-14 81.6 198 34.8
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.5e-13 80.5 176 34.7
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.5e-13 79.0 92 50.0
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 2.5e-11 73.2 146 35.6
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 4.2e-11 72.4 199 32.2
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 7.1e-11 71.6 148 37.2
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 9.3e-11 71.2 115 34.8
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 1.6e-10 70.5 140 37.9
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 3.0e-09 66.2 155 35.5
Sed0003747 Sechium edule HOM05D006962 ORTHO05D008696 4.1e-06 55.8 186 29.6


User provided reference genes

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