Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.9e-170 602.4 305 100.0
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 6.3e-126 454.5 307 75.6
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 1.6e-124 449.9 310 75.2
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 7.7e-124 447.6 307 76.2
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 1.3e-123 446.8 302 75.5
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 5.0e-123 444.9 308 74.0
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 4.7e-121 438.3 303 74.3
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 1.0e-120 437.2 313 73.8
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.5e-119 433.3 298 75.2
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 9.8e-119 430.6 304 74.0
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 1.7e-118 429.9 256 82.8
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 2.2e-118 429.5 304 73.0
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.4e-117 426.0 272 78.3
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 6.6e-115 417.9 329 68.7
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 8.6e-115 417.5 277 74.4
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 4.3e-114 415.2 317 70.0
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 5.6e-114 414.8 267 76.4
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 4.7e-113 411.8 261 77.0
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.4e-112 410.2 311 69.1
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 1.4e-112 410.2 309 68.9
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.8e-112 409.8 258 76.7
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 5.2e-112 408.3 235 84.3
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 4.4e-111 405.2 305 68.9
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 5.7e-111 404.8 314 68.8
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 9.8e-111 404.1 258 76.7
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 9.8e-111 404.1 252 78.6
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.7e-110 403.3 260 77.3
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.7e-110 402.1 269 73.2
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 6.4e-110 401.4 282 71.6
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.1e-109 400.6 256 75.0
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.8e-109 399.8 307 69.1
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 1.8e-109 399.8 269 74.0
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.8e-109 399.8 295 69.5
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 2.4e-109 399.4 262 75.6
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 4.1e-109 398.7 257 77.8
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 4.1e-109 398.7 265 75.5
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 5.4e-109 398.3 260 76.9
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 7.0e-109 397.9 304 67.4
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 2.7e-108 396.0 272 74.6
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 2.7e-108 396.0 262 74.8
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 2.7e-108 396.0 257 75.5
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 3.5e-108 395.6 281 71.2
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 3.5e-108 395.6 263 74.5
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 7.8e-108 394.4 258 74.8
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.3e-107 393.7 281 70.8
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 1.3e-107 393.7 262 74.8
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.3e-107 392.9 311 66.9
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 3.9e-107 392.1 263 75.7
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 5.0e-107 391.7 269 71.4
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 6.6e-107 391.3 313 68.1
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 8.6e-107 391.0 300 67.3
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.9e-106 389.8 311 67.8
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 2.5e-106 389.4 313 65.8
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 3.3e-106 389.0 300 67.7
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 6.2e-105 384.8 299 65.9
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 8.0e-105 384.4 238 79.4
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 8.0e-105 384.4 302 67.9
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 1.0e-104 384.0 273 71.8
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 1.4e-104 383.6 255 74.5
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 5.2e-104 381.7 321 64.2
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 6.8e-104 381.3 232 80.2
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 1.5e-103 380.2 268 69.4
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 1.3e-102 377.1 268 73.9
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 1.7e-102 376.7 304 67.4
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 1.7e-102 376.7 227 80.2
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 2.2e-102 376.3 270 70.7
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 2.9e-102 375.9 248 73.8
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 3.7e-102 375.6 265 70.9
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 6.4e-102 374.8 281 68.3
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 6.4e-102 374.8 265 70.9
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 6.4e-102 374.8 314 61.1
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 8.3e-102 374.4 270 70.0
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 8.3e-102 374.4 300 67.7
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 2.4e-101 372.9 226 81.4
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 4.1e-101 372.1 224 81.2
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 1.0e-99 367.5 252 71.8
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 1.7e-99 366.7 255 70.6
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 2.1e-97 359.8 314 64.3
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 2.8e-97 359.4 294 63.3
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 2.8e-97 359.4 256 70.7
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.8e-97 359.4 266 68.0
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 3.6e-97 359.0 265 67.9
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 8.1e-97 357.8 255 68.2
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 1.1e-96 357.5 236 74.2
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 4.0e-96 355.5 254 68.1
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 4.0e-96 355.5 254 68.1
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 5.2e-96 355.1 254 68.1
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 8.9e-96 354.4 255 67.5
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 2.6e-95 352.8 255 67.5
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.9e-94 349.4 251 70.1
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.4e-93 346.3 250 69.6
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 1.6e-92 343.6 255 68.2
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.7e-92 342.8 250 69.6
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 8.6e-91 337.8 314 59.6
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 2.5e-90 336.3 225 74.7
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 7.3e-90 334.7 295 62.4
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 3.6e-89 332.4 233 71.2
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 4.4e-87 325.5 289 60.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.7e-84 316.2 248 65.3
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.6e-81 307.0 217 71.9
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 8.4e-78 294.7 249 63.1
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 4.2e-77 292.4 252 56.0
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 1.0e-75 287.7 253 57.7
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.3e-73 280.8 229 62.9
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 2.8e-73 279.6 241 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 9.0e-64 248.1 239 54.4
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 9.9e-63 244.6 220 54.5
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 2.4e-61 240.0 148 81.1
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 5.1e-59 232.3 196 60.7
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 7.1e-53 211.8 240 47.1
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 8.8e-27 125.2 224 35.3
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 5.7e-26 122.5 137 51.8
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 3.7e-25 119.8 122 54.9
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 1.4e-19 101.3 273 30.4
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 5.3e-16 89.4 62 67.7
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 5.3e-16 89.4 62 67.7
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 9.8e-10 68.6 231 29.0


User provided reference genes

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