Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 0.0e+00 1124.4 661 100.0
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 6.1e-158 562.0 681 55.8
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 6.7e-157 558.5 678 55.9
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 2.2e-152 543.5 665 52.2
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 6.5e-152 542.0 681 55.1
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.7e-144 517.3 688 51.3
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 9.8e-140 501.5 658 50.6
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 2.4e-138 496.9 670 49.3
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 7.7e-137 491.9 672 52.2
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 5.0e-136 489.2 687 49.5
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-134 484.2 674 51.0
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 2.1e-134 483.8 676 49.7
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.1e-134 483.8 672 50.7
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 4.0e-133 479.6 670 53.4
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 1.2e-132 478.0 690 53.2
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 3.4e-132 476.5 666 50.5
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 7.5e-132 475.3 675 51.0
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.7e-129 466.8 678 48.7
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 5.9e-129 465.7 703 45.9
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.3e-128 464.5 670 51.6
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 5.0e-128 462.6 688 50.7
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 3.3e-127 459.9 700 46.3
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.2e-126 458.0 622 47.4
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.0e-125 454.9 684 49.1
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.3e-125 453.8 692 49.6
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.1e-122 444.9 680 52.9
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.9e-122 444.1 705 47.4
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 3.2e-122 443.4 624 46.6
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 7.0e-122 442.2 543 52.3
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.6e-121 441.0 701 49.9
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 3.5e-121 439.9 682 47.8
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.0e-121 439.1 675 46.5
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 6.0e-121 439.1 705 48.5
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 3.3e-119 433.3 678 49.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.2e-118 431.4 716 43.0
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.8e-117 427.6 697 47.6
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 6.8e-117 425.6 677 43.3
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 2.0e-116 424.1 705 47.0
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 5.8e-116 422.5 674 46.7
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.7e-115 421.0 705 46.4
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.2e-115 420.6 672 48.4
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 3.7e-115 419.9 709 44.1
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.9e-114 417.5 667 45.1
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 9.2e-114 415.2 682 43.0
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.6e-113 414.5 692 46.7
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.1e-111 408.3 669 49.3
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 5.6e-111 406.0 673 43.4
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 2.1e-110 404.1 672 47.8
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 4.7e-110 402.9 675 42.8
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.3e-109 400.6 682 44.3
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 4.0e-109 399.8 682 43.5
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.6e-108 397.1 699 44.6
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 3.4e-108 396.7 658 49.4
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 7.6e-108 395.6 673 46.7
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.7e-107 394.4 640 46.2
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 3.8e-107 393.3 608 49.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 8.4e-107 392.1 699 45.5
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 2.4e-106 390.6 658 48.9
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.7e-105 387.1 668 45.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 3.5e-105 386.7 661 47.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.0e-105 386.0 673 44.1
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 3.0e-104 383.6 671 43.5
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.9e-104 383.3 641 44.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 3.9e-104 383.3 672 44.2
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 8.6e-104 382.1 712 45.6
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.5e-103 381.3 592 49.0
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 4.3e-103 379.8 669 46.5
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 9.6e-103 378.6 668 46.6
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 2.8e-102 377.1 661 45.8
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.8e-101 374.4 669 46.3
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.2e-100 371.7 690 45.9
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 4.4e-100 369.8 558 47.8
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 5.8e-100 369.4 661 44.8
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.9e-99 366.3 677 46.8
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.0e-96 358.6 674 48.1
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.3e-96 357.5 581 43.9
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.3e-96 357.5 663 44.5
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 3.6e-94 350.1 670 42.1
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 9.0e-93 345.5 678 39.8
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.9e-90 337.8 646 47.1
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.6e-89 333.2 650 46.3
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.1e-87 328.6 661 43.3
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 4.0e-85 320.1 674 40.9
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 9.0e-85 318.9 665 38.8
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.5e-84 318.2 659 44.2
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 5.8e-84 316.2 663 44.8
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 9.9e-84 315.5 456 49.6
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 9.9e-84 315.5 563 45.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.2e-83 314.3 648 40.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 2.7e-81 307.4 503 45.7
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.9e-80 303.5 670 41.3
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 6.7e-80 302.8 564 47.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 5.3e-77 293.1 644 40.1
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 6.9e-77 292.7 644 40.1
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 9.0e-77 292.4 648 42.1
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 5.8e-76 289.7 644 38.8
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 7.6e-76 289.3 700 39.9
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.4e-74 285.0 653 38.7
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.9e-74 284.6 653 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.6e-73 281.6 693 37.8
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.6e-73 281.6 606 39.3
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.1e-71 275.4 702 36.2
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.3e-71 273.9 358 49.4
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.1e-70 271.2 702 36.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.0e-68 264.6 460 40.2
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 7.2e-66 256.1 689 38.5
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.1e-65 254.6 608 39.6
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.3e-63 247.3 448 39.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.9e-61 239.6 453 43.9
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.4e-56 225.3 607 36.1
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 3.3e-55 220.7 282 52.5
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.4e-47 193.0 352 38.9
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.7e-43 181.8 365 42.5
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 7.5e-39 166.4 573 36.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.3e-38 165.6 619 32.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 2.4e-37 161.4 204 50.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 2.7e-36 157.9 311 43.1
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.4e-32 145.6 686 30.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 8.8e-32 142.9 131 58.0
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.0e-27 129.4 294 40.5
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.9e-26 125.2 226 49.1
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.6e-25 122.1 632 31.3
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.2e-23 115.9 631 26.3
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.7e-23 113.6 161 46.6
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 5.0e-19 100.5 163 39.9
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.6e-19 100.1 600 27.8
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 4.3e-18 97.4 167 44.3
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 5.4e-13 80.5 128 43.0
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 3.3e-10 71.2 172 42.4
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.6e-09 68.9 529 24.0
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.2e-09 67.0 108 50.9
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.8e-08 65.5 108 50.0
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.8e-08 65.5 132 43.9
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-06 59.3 106 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4909 Anthoceros agrestis HOM05D005724 ORTHO05D006636 6.4e-06 57.0 68 45.6


User provided reference genes

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