Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.4e-162 576.2 297 100.0
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 2.3e-120 436.0 297 74.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 8.6e-120 434.1 297 74.1
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.9e-119 433.0 297 73.7
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 7.3e-119 431.0 289 75.4
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 1.2e-118 430.3 300 73.7
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 2.4e-114 416.0 298 70.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 4.1e-114 415.2 292 72.9
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 2.3e-112 409.5 302 71.2
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 6.6e-112 407.9 299 70.9
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.1e-111 407.1 291 72.2
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.9e-111 406.4 311 69.8
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 2.8e-110 402.5 298 70.5
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 4.7e-110 401.7 299 69.2
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.1e-109 400.6 292 70.2
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 4.0e-109 398.7 295 68.8
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 4.0e-109 398.7 291 70.4
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 6.8e-109 397.9 292 69.2
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 6.8e-109 397.9 302 70.2
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.2e-108 397.1 298 70.1
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.2e-108 397.1 312 71.8
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.0e-108 396.4 296 68.6
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.0e-108 396.4 303 69.6
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.6e-108 396.0 291 70.1
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 3.4e-108 395.6 294 68.4
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 3.4e-108 395.6 305 67.5
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.4e-108 395.2 296 69.9
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 4.4e-108 395.2 295 69.5
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 4.4e-108 395.2 292 69.2
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 7.6e-108 394.4 277 72.2
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 1.3e-107 393.7 325 63.7
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.7e-107 393.3 291 68.7
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.7e-107 393.3 303 69.0
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.7e-107 393.3 286 69.2
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 2.2e-107 392.9 293 69.3
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 3.8e-107 392.1 303 69.6
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 4.9e-107 391.7 291 68.4
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 8.4e-107 391.0 292 68.2
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 8.4e-107 391.0 296 70.3
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.4e-106 390.2 303 66.7
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 2.4e-106 389.4 296 67.6
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 3.2e-106 389.0 303 69.0
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.2e-106 388.7 303 67.3
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 5.4e-106 388.3 308 65.9
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 5.4e-106 388.3 312 67.9
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 9.2e-106 387.5 303 68.3
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 3.5e-105 385.6 300 66.3
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 1.0e-104 384.0 293 66.6
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 3.0e-104 382.5 284 66.2
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 5.1e-104 381.7 301 67.4
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 6.6e-104 381.3 273 72.9
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 2.5e-103 379.4 304 68.8
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 3.3e-103 379.0 278 68.0
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 4.3e-103 378.6 305 65.2
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 9.6e-103 377.5 301 67.1
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.6e-102 376.7 295 67.8
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.6e-102 376.7 297 68.4
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 2.8e-102 375.9 279 67.7
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 2.8e-102 375.9 304 66.8
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 4.7e-102 375.2 342 58.8
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 1.1e-101 374.0 297 67.0
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 6.9e-101 371.3 280 66.1
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 2.6e-100 369.4 297 66.7
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.6e-100 369.4 281 66.2
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 4.4e-100 368.6 297 65.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 1.7e-99 366.7 273 67.0
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.7e-99 366.7 281 68.7
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.1e-98 364.0 278 65.5
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.9e-98 363.2 276 66.7
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.4e-98 362.8 281 64.8
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 2.1e-97 359.8 280 66.4
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 3.5e-97 359.0 305 66.2
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.0e-96 355.9 322 61.5
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 3.9e-96 355.5 296 62.2
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 2.5e-95 352.8 291 66.3
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 2.5e-95 352.8 295 65.1
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 9.6e-95 350.9 322 60.6
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 2.8e-94 349.4 229 73.4
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 3.6e-94 349.0 296 64.2
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 4.8e-94 348.6 286 61.9
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 1.4e-93 347.1 306 62.7
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 6.9e-93 344.7 306 62.7
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 9.0e-93 344.4 307 64.5
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 8.4e-91 337.8 311 61.1
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.1e-90 337.4 330 57.6
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 2.1e-89 333.2 281 61.6
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 4.6e-89 332.0 297 58.9
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.0e-88 329.3 281 61.9
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 2.1e-86 323.2 299 60.9
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 8.1e-86 321.2 280 60.7
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 1.1e-85 320.9 299 58.9
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.8e-85 320.1 295 59.7
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 2.2e-83 313.2 301 57.5
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.6e-81 305.4 234 70.5
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 9.6e-79 297.7 226 66.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 2.8e-78 296.2 280 56.4
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 8.2e-78 294.7 293 55.6
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 7.6e-76 288.1 286 55.9
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.5e-74 282.0 194 69.6
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 8.5e-67 258.1 176 71.0
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 2.2e-62 243.4 192 65.6
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 1.4e-58 230.7 141 76.6
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.1e-57 226.9 304 46.4
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 7.9e-57 224.9 183 65.6
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 3.3e-55 219.5 193 58.0
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 8.2e-54 214.9 305 41.3
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.4e-53 213.4 122 82.8
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 7.2e-50 201.8 225 51.1
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 1.4e-48 197.6 124 79.8
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 3.0e-48 196.4 302 41.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 6.7e-48 195.3 180 61.1
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 4.4e-47 192.6 295 38.0
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 4.1e-45 186.0 301 40.9
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 7.0e-45 185.3 160 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 6.5e-43 178.7 305 36.7
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.6e-41 172.9 145 62.1
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.4e-39 166.4 149 59.7
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 9.7e-39 164.9 150 66.0
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.7e-36 156.8 104 77.9
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 7.7e-36 155.2 104 76.9
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 6.1e-33 145.6 137 63.5
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.7e-30 137.5 89 71.9
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 7.5e-23 112.1 85 68.2
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.7e-22 110.9 120 55.0
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 5.4e-21 105.9 81 74.1
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.0e-20 104.0 102 57.8
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.9e-18 97.4 275 34.2
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.1e-17 94.0 108 50.9
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 2.8e-17 93.6 112 55.4
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 1.4e-16 91.3 276 30.1
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 2.4e-13 80.5 293 29.0
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 2.3e-08 63.9 169 27.2
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 3.1e-08 63.5 87 47.1


User provided reference genes

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