Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 0.0e+00 1456.4 833 100.0
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.4e-252 876.7 848 65.6
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 4.0e-247 858.6 852 65.3
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 6.2e-232 808.1 842 61.5
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.9e-228 796.6 818 61.7
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 9.2e-228 794.3 818 61.6
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.1e-225 787.3 826 61.5
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 3.0e-218 762.7 824 59.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.1e-216 756.5 827 60.6
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.7e-216 755.4 833 59.1
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.1e-215 754.2 833 58.9
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 7.6e-214 748.0 837 58.1
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.7e-213 746.9 814 58.7
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.1e-212 744.2 898 54.2
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.7e-211 739.6 838 58.2
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.8e-211 738.0 829 57.9
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.9e-207 724.5 833 58.0
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.3e-205 720.7 839 58.2
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 6.4e-205 718.4 840 58.0
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 5.4e-204 715.3 851 58.6
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 5.4e-204 715.3 849 57.8
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 6.0e-203 711.8 838 57.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.0e-202 711.1 858 56.4
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.7e-202 710.3 840 58.2
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-202 710.3 848 56.7
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 8.7e-202 708.0 848 56.7
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.1e-201 707.6 811 57.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.5e-201 706.4 842 55.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.1e-199 701.0 870 52.1
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.8e-199 700.3 832 57.0
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.4e-199 699.9 853 56.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 5.3e-199 698.7 838 57.2
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 8.4e-197 691.4 846 56.5
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 4.2e-196 689.1 857 54.6
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 7.1e-196 688.3 837 49.6
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 7.9e-195 684.9 836 55.0
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.7e-194 681.8 687 65.1
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.9e-193 680.2 829 50.1
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 2.5e-193 679.9 848 52.0
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 8.1e-192 674.9 810 51.4
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 4.0e-191 672.5 851 55.3
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 9.0e-191 671.4 826 55.9
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 5.8e-190 668.7 786 59.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.3e-189 667.5 823 49.8
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.9e-189 666.4 853 48.9
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.4e-188 664.1 824 54.4
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.2e-187 661.0 864 53.8
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.6e-187 660.6 865 53.6
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.7e-187 659.8 808 53.7
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 7.9e-187 658.3 881 51.9
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.0e-186 657.9 850 54.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.0e-186 656.4 851 53.3
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.5e-185 654.1 824 54.2
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.5e-185 653.3 812 55.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.3e-185 652.9 856 51.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 7.4e-185 651.7 809 54.1
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.4e-183 646.7 805 48.2
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-182 644.4 843 52.8
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 5.8e-182 642.1 861 50.9
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.3e-181 641.0 855 48.3
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 7.1e-180 635.2 797 55.2
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.6e-179 634.0 835 47.8
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.7e-179 633.3 874 46.8
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.3e-178 630.9 852 52.1
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 3.9e-178 629.4 852 51.8
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.5e-177 627.5 829 47.8
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.5e-177 626.7 801 54.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 9.7e-177 624.8 798 53.5
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.3e-176 624.4 847 53.0
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 2.2e-176 623.6 836 46.9
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 8.2e-176 621.7 794 53.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 4.1e-175 619.4 795 53.7
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.3e-175 619.0 839 51.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 5.3e-175 619.0 823 52.4
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.2e-174 617.8 853 51.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 5.9e-174 615.5 819 49.2
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 1.3e-173 614.4 829 52.1
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.7e-171 606.7 845 49.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 7.9e-171 605.1 822 50.9
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 7.9e-171 605.1 769 54.0
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.3e-170 604.4 680 59.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 5.1e-170 602.4 816 50.1
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.1e-169 601.3 843 49.6
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 6.9e-167 592.0 844 50.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.2e-166 591.3 836 51.3
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-161 574.3 492 62.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 5.7e-161 572.4 779 46.5
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 4.8e-160 569.3 844 50.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.4e-156 557.8 842 50.5
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.2e-156 556.2 689 56.0
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 4.7e-155 552.7 813 51.0
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 1.1e-153 548.1 804 51.1
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.3e-153 546.6 804 51.1
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 3.1e-151 540.0 807 50.6
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 4.1e-151 539.7 807 50.7
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.6e-147 527.7 850 46.1
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.6e-147 527.7 803 49.6
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 6.7e-146 522.3 793 49.2
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 4.7e-139 499.6 848 48.1
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.4e-138 498.0 755 50.1
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.7e-126 457.2 876 45.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 3.8e-125 453.4 902 43.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 5.0e-125 453.0 881 44.2
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 6.1e-123 446.0 492 54.7
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 9.5e-116 422.2 824 44.8
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 8.0e-115 419.1 877 41.2
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.9e-112 409.8 775 43.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 6.2e-99 366.3 821 37.1
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 7.6e-97 359.4 851 38.7
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 5.1e-85 320.1 561 45.8
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 7.9e-78 296.2 496 40.7
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 7.4e-76 289.7 496 40.3
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.8e-72 277.3 252 58.3
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.1e-71 275.8 593 35.1
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.5e-68 265.4 455 38.2
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.8e-64 250.8 839 29.3
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 4.3e-52 210.7 783 29.6
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.9e-47 195.3 193 61.1
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.5e-41 175.6 692 33.8
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 8.0e-38 163.3 443 32.7
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 3.9e-37 161.0 376 33.2
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.5e-36 159.1 193 48.2
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.0e-32 146.4 113 63.7
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 6.5e-32 143.7 252 38.1
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 8.3e-27 126.7 170 46.5
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.1e-26 126.3 158 45.6
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.7e-24 119.0 179 43.6
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 5.0e-16 90.9 185 35.1
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 1.9e-15 89.0 74 56.8
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 3.4e-12 78.2 120 42.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 3.7e-11 74.7 293 29.4
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 5.4e-10 70.9 70 51.4
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 2.0e-09 68.9 65 53.8
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 5.9e-09 67.4 66 53.0
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 1.7e-08 65.9 116 41.4
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.7e-08 65.9 47 66.0
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 2.3e-08 65.5 66 54.5
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.0e-08 64.3 135 32.6
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 2.5e-07 62.0 82 43.9
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 7.3e-07 60.5 181 26.5
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.6e-06 59.3 56 55.4
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 4.7e-06 57.8 55 54.5


User provided reference genes

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