Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G000100 Manihot esculenta HOM05D000071 ORTHO05D000029 1.5e-63 247.3 292 100.0
Manes.12G001300 Manihot esculenta HOM05D000071 ORTHO05D000029 4.9e-27 125.9 233 76.4
Thecc.10G149500 Theobroma cacao HOM05D000071 ORTHO05D000029 2.1e-17 94.0 124 42.7
Manes.09G007400 Manihot esculenta HOM05D000071 ORTHO05D000029 1.8e-16 90.9 119 42.0
Gohir.D02G150500 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.3e-14 84.7 122 48.4
CSS0006363 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.8e-14 83.6 123 43.9
Gorai.005G168800 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.8e-14 83.6 122 47.5
CSS0017287 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 6.3e-14 82.4 129 42.6
CSS0049713 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.4e-13 80.5 120 45.8
Potri.010G058850 Populus trichocarpa HOM05D000071 ORTHO05D000029 4.1e-13 79.7 121 38.0
CSS0019714 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.0e-13 78.6 126 37.3
Thecc.02G306800 Theobroma cacao HOM05D000071 ORTHO05D000029 9.0e-13 78.6 116 44.8
Cc07_g16430 Coffea canephora HOM05D000071 ORTHO05D000029 2.0e-12 77.4 124 37.9
CSS0025098 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.4e-12 76.6 123 41.5
CSS0046869 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.4e-12 76.6 123 41.5
COL.COLO4_20361 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.3e-11 74.7 99 56.6
CSS0025857 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.2e-11 73.9 127 48.8
Hma1.2p1_0747F.1_g212480 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 6.5e-11 72.4 124 33.9
Nn3g19133 Nelumbo nucifera HOM05D000071 ORTHO05D000029 1.9e-10 70.9 121 37.2
Prupe.7G040200 Prunus persica HOM05D000071 ORTHO05D000029 1.9e-10 70.9 118 50.0
QL03p053807 Quercus lobata HOM05D000071 ORTHO05D000029 1.9e-10 70.9 123 34.1
FAN25G1354 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.5e-10 70.5 124 45.2
PGR083G2557 Punica granatum HOM05D000071 ORTHO05D000029 2.5e-10 70.5 122 33.6
QL03p053878 Quercus lobata HOM05D000071 ORTHO05D000029 3.2e-10 70.1 121 43.0
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 4.2e-10 69.7 124 37.1
Eucgr.B03475 Eucalyptus grandis HOM05D000071 ORTHO05D000029 5.5e-10 69.3 69 49.3
Hma1.2p1_1239F.1_g269440 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 5.5e-10 69.3 103 39.8
Thecc.02G277200 Theobroma cacao HOM05D000071 ORTHO05D000029 5.5e-10 69.3 123 51.2
CSS0038036 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 7.2e-10 68.9 125 36.0
QL03p053955 Quercus lobata HOM05D000071 ORTHO05D000029 9.3e-10 68.6 124 41.9
CSS0019293 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.2e-09 68.2 122 45.9
CSS0047299 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.2e-09 68.2 122 45.9
Glyma.16G190500 Glycine max HOM05D000071 ORTHO05D000029 1.2e-09 68.2 123 44.7
MD17G1013200 Malus domestica HOM05D000071 ORTHO05D000029 1.2e-09 68.2 117 43.6
MD17G1013400 Malus domestica HOM05D000071 ORTHO05D000029 1.2e-09 68.2 122 43.4
Eucgr.B03476 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.6e-09 67.8 69 49.3
Eucgr.B03478 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.6e-09 67.8 121 51.2
Thecc.02G277500 Theobroma cacao HOM05D000071 ORTHO05D000029 2.1e-09 67.4 73 43.8
Cpa.g.sc701.4 Carica papaya HOM05D000071 ORTHO05D000029 2.7e-09 67.0 122 43.4
Manes.04G014401 Manihot esculenta HOM05D000071 ORTHO05D000029 2.7e-09 67.0 122 45.1
QL05p023777 Quercus lobata HOM05D000071 ORTHO05D000029 2.7e-09 67.0 127 36.2
CSS0004324 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.6e-09 66.6 95 53.7
Cpa.g.sc171.28 Carica papaya HOM05D000071 ORTHO05D000029 3.6e-09 66.6 119 44.5
QL03p054080 Quercus lobata HOM05D000071 ORTHO05D000029 3.6e-09 66.6 121 29.8
COL.COLO4_20374 Corchorus olitorius HOM05D000071 ORTHO05D000029 6.1e-09 65.9 73 45.2
Duzib114G0827 Durio zibethinus HOM05D000071 ORTHO05D000029 7.9e-09 65.5 111 49.5
MD17G1013300 Malus domestica HOM05D000071 ORTHO05D000029 7.9e-09 65.5 122 42.6
QL05p023979 Quercus lobata HOM05D000071 ORTHO05D000029 7.9e-09 65.5 124 35.5
Thecc.02G277300 Theobroma cacao HOM05D000071 ORTHO05D000029 7.9e-09 65.5 115 29.6
COL.COLO4_20378 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.0e-08 65.1 70 47.1
PGR102G2300 Punica granatum HOM05D000071 ORTHO05D000029 1.0e-08 65.1 72 41.7
QL05p023770 Quercus lobata HOM05D000071 ORTHO05D000029 1.3e-08 64.7 123 34.1
Thecc.02G277700 Theobroma cacao HOM05D000071 ORTHO05D000029 1.3e-08 64.7 73 46.6
CSS0021909 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.8e-08 64.3 141 33.3
Phvul.004G115200 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 1.8e-08 64.3 134 30.6
VMungo0720G1611 Vigna mungo HOM05D000071 ORTHO05D000029 1.8e-08 64.3 49 57.1
MD09G1012600 Malus domestica HOM05D000071 ORTHO05D000029 3.0e-08 63.5 122 40.2
Ciclev10010397m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.9e-08 63.2 124 32.3
QL04p016935 Quercus lobata HOM05D000071 ORTHO05D000029 3.9e-08 63.2 124 34.7
Hma1.2p1_0668F.1_g199980 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 5.1e-08 62.8 116 30.2
Prupe.3G304400 Prunus persica HOM05D000071 ORTHO05D000029 5.1e-08 62.8 118 44.1
COL.COLO4_20365 Corchorus olitorius HOM05D000071 ORTHO05D000029 6.7e-08 62.4 125 41.6
COL.COLO4_20367 Corchorus olitorius HOM05D000071 ORTHO05D000029 6.7e-08 62.4 73 42.5
Nn3g19132 Nelumbo nucifera HOM05D000071 ORTHO05D000029 6.7e-08 62.4 124 36.3
Cc11_g06500 Coffea canephora HOM05D000071 ORTHO05D000029 8.7e-08 62.0 119 31.1
Medtr6g016200 Medicago truncatula HOM05D000071 ORTHO05D000029 8.7e-08 62.0 133 30.8
COL.COLO4_20701 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.1e-07 61.6 113 47.8
DCAR_030240 Daucus carota HOM05D000071 ORTHO05D000029 1.1e-07 61.6 122 32.0
Rhsim08G0051000 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.1e-07 61.6 121 46.3
Glyma.18G191700 Glycine max HOM05D000071 ORTHO05D000029 1.5e-07 61.2 130 40.8
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.5e-07 61.2 123 33.3
Ciclev10010515m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.9e-07 60.8 124 30.6
Gorai.007G339000 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.9e-07 60.8 124 32.3
Prupe.7G034600 Prunus persica HOM05D000071 ORTHO05D000029 1.9e-07 60.8 199 29.6
Gohir.D11G308150 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.5e-07 60.5 124 32.3
CSS0041720 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.3e-07 60.1 128 28.9
QL05p024068 Quercus lobata HOM05D000071 ORTHO05D000029 3.3e-07 60.1 121 30.6
RcHm_v2.0_Chr5g0020931 Rosa chinensis HOM05D000071 ORTHO05D000029 3.3e-07 60.1 125 44.0
RcHm_v2.0_Chr5g0022791 Rosa chinensis HOM05D000071 ORTHO05D000029 3.3e-07 60.1 109 46.8
TPR.G4580 Trifolium pratense HOM05D000071 ORTHO05D000029 3.3e-07 60.1 129 42.6
Lsat_1_v5_gn_6_42540 Lactuca sativa HOM05D000071 ORTHO05D000029 4.3e-07 59.7 130 38.5
QL11p011787 Quercus lobata HOM05D000071 ORTHO05D000029 4.3e-07 59.7 122 30.3
Thecc.10G091700 Theobroma cacao HOM05D000071 ORTHO05D000029 4.3e-07 59.7 119 42.0
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.7e-07 59.3 130 36.2
HanXRQChr14g0426751 Helianthus annuus HOM05D000071 ORTHO05D000029 5.7e-07 59.3 128 43.8
Medtr6g016130 Medicago truncatula HOM05D000071 ORTHO05D000029 5.7e-07 59.3 134 34.3
Oeu030965.1 Olea europaea HOM05D000071 ORTHO05D000029 5.7e-07 59.3 123 33.3
Duzib112G0005 Durio zibethinus HOM05D000071 ORTHO05D000029 7.4e-07 58.9 124 32.3
Duzib177G0440 Durio zibethinus HOM05D000071 ORTHO05D000029 7.4e-07 58.9 123 43.9
Eucgr.B03474 Eucalyptus grandis HOM05D000071 ORTHO05D000029 7.4e-07 58.9 75 44.0
FvH4_4g32560 Fragaria vesca HOM05D000071 ORTHO05D000029 7.4e-07 58.9 78 43.6
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.4e-07 58.9 126 31.0
Lj1g0005655 Lotus japonicus HOM05D000071 ORTHO05D000029 7.4e-07 58.9 132 26.5
MD01G1180500 Malus domestica HOM05D000071 ORTHO05D000029 7.4e-07 58.9 123 42.3
MD10G1222500 Malus domestica HOM05D000071 ORTHO05D000029 7.4e-07 58.9 118 30.5
VMungo0720G1983 Vigna mungo HOM05D000071 ORTHO05D000029 7.4e-07 58.9 69 46.4
CAN.G1034.17 Capsicum annuum HOM05D000071 ORTHO05D000029 9.7e-07 58.5 74 45.9
CAN.G1034.29 Capsicum annuum HOM05D000071 ORTHO05D000029 9.7e-07 58.5 74 45.9
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 9.7e-07 58.5 124 33.1
MD01G1212300 Malus domestica HOM05D000071 ORTHO05D000029 9.7e-07 58.5 118 31.4
MD01G1212600 Malus domestica HOM05D000071 ORTHO05D000029 9.7e-07 58.5 118 28.8
RcHm_v2.0_Chr2g0096591 Rosa chinensis HOM05D000071 ORTHO05D000029 9.7e-07 58.5 118 30.5
arahy.Tifrunner.gnm1.ann1.NSEC41 Arachis hypogaea HOM05D000071 ORTHO05D000029 1.3e-06 58.2 126 27.0
CANSAT11G1634 Cannabis sativa HOM05D000071 ORTHO05D000029 1.3e-06 58.2 130 39.2
RcHm_v2.0_Chr5g0022221 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-06 58.2 114 41.2
FAN21G1849 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-06 57.8 112 33.0
Lj1g0022948 Lotus japonicus HOM05D000071 ORTHO05D000029 1.6e-06 57.8 130 28.5
Prupe.7G032900 Prunus persica HOM05D000071 ORTHO05D000029 1.6e-06 57.8 119 36.1
Rhsim03G0184700 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.6e-06 57.8 119 41.2
COL.COLO4_20363 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.2e-06 57.4 53 49.1
Dinv02377 Davidia involucrata HOM05D000071 ORTHO05D000029 2.2e-06 57.4 64 45.3
ECA233G2057 Erigeron canadensis HOM05D000071 ORTHO05D000029 2.2e-06 57.4 118 41.5
FAN08G3589 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.2e-06 57.4 121 38.8
Gohir.D03G105900 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.2e-06 57.4 128 42.2
Lsat_1_v5_gn_6_42241 Lactuca sativa HOM05D000071 ORTHO05D000029 2.2e-06 57.4 130 42.3
Lj2g0018296 Lotus japonicus HOM05D000071 ORTHO05D000029 2.2e-06 57.4 129 38.0
Nn3g18616 Nelumbo nucifera HOM05D000071 ORTHO05D000029 2.2e-06 57.4 121 41.3
TAR266G0003 Trochodendron aralioides HOM05D000071 ORTHO05D000029 2.2e-06 57.4 61 47.5
GSVIVG01001802001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.2e-06 57.4 70 42.9
CANSAT64G2047 Cannabis sativa HOM05D000071 ORTHO05D000029 2.8e-06 57.0 66 39.4
CiPaw.05G260900 Carya illinoinensis HOM05D000071 ORTHO05D000029 2.8e-06 57.0 126 30.2
Ciclev10027376m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.8e-06 57.0 120 31.7
Gohir.A03G060100 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.8e-06 57.0 127 38.6
Lj1g0009087 Lotus japonicus HOM05D000071 ORTHO05D000029 2.8e-06 57.0 130 28.5
Lj1g0015052 Lotus japonicus HOM05D000071 ORTHO05D000029 2.8e-06 57.0 130 28.5
QL04p016837 Quercus lobata HOM05D000071 ORTHO05D000029 2.8e-06 57.0 72 40.3
Atru.chr2.3395 Acer truncatum HOM05D000071 ORTHO05D000029 3.7e-06 56.6 123 43.1
Dinv05738 Davidia involucrata HOM05D000071 ORTHO05D000029 3.7e-06 56.6 130 47.7
FAN16G2146 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.7e-06 56.6 123 39.8
Medtr6g016140 Medicago truncatula HOM05D000071 ORTHO05D000029 3.7e-06 56.6 129 31.0
Rhsim03G0185600 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.7e-06 56.6 124 40.3
RcHm_v2.0_Chr2g0143001 Rosa chinensis HOM05D000071 ORTHO05D000029 3.7e-06 56.6 118 45.8
RcHm_v2.0_Chr5g0022591 Rosa chinensis HOM05D000071 ORTHO05D000029 3.7e-06 56.6 109 39.4
TPR.G4471 Trifolium pratense HOM05D000071 ORTHO05D000029 3.7e-06 56.6 124 29.8
CSS0007375 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 4.8e-06 56.2 124 40.3
COL.COLO4_20700 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.8e-06 56.2 117 49.6
FvH4_3g13600 Fragaria vesca HOM05D000071 ORTHO05D000029 4.8e-06 56.2 114 39.5
FAN25G0850 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.8e-06 56.2 130 43.8
Gorai.003G112100 Gossypium raimondii HOM05D000071 ORTHO05D000029 4.8e-06 56.2 127 35.4
Hma1.2p1_1220F.1_g268020 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 4.8e-06 56.2 124 31.5
Manes.16G058200 Manihot esculenta HOM05D000071 ORTHO05D000029 4.8e-06 56.2 69 42.0
Prupe.2G270000 Prunus persica HOM05D000071 ORTHO05D000029 4.8e-06 56.2 116 36.2
QL05p024141 Quercus lobata HOM05D000071 ORTHO05D000029 4.8e-06 56.2 125 30.4
FAN25G1875 Fragaria x ananassa HOM05D000071 ORTHO05D000029 6.3e-06 55.8 49 53.1
Gohir.A11G070200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 6.3e-06 55.8 118 29.7
Hma1.2p1_0088F.1_g045200 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 6.3e-06 55.8 75 42.7
Nitab4.5_0000350g0150 Nicotiana tabacum HOM05D000071 ORTHO05D000029 6.3e-06 55.8 118 30.5
Peaxi162Scf00037g00067 Petunia axillaris HOM05D000071 ORTHO05D000029 6.3e-06 55.8 125 48.0
QL05p023568 Quercus lobata HOM05D000071 ORTHO05D000029 6.3e-06 55.8 124 29.0
RcHm_v2.0_Chr2g0175371 Rosa chinensis HOM05D000071 ORTHO05D000029 6.3e-06 55.8 118 41.5
GSVIVG01033116001 Vitis vinifera HOM05D000071 ORTHO05D000029 6.3e-06 55.8 119 50.4
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 8.2e-06 55.5 126 27.0
CiPaw.05G209900 Carya illinoinensis HOM05D000071 ORTHO05D000029 8.2e-06 55.5 120 40.8
COL.COLO4_20366 Corchorus olitorius HOM05D000071 ORTHO05D000029 8.2e-06 55.5 124 45.2
MBI17_g33326_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 8.2e-06 55.5 121 40.5
QL05p014991 Quercus lobata HOM05D000071 ORTHO05D000029 8.2e-06 55.5 76 43.4
RcHm_v2.0_Chr7g0207801 Rosa chinensis HOM05D000071 ORTHO05D000029 8.2e-06 55.5 116 27.6
VMungo0464G1923 Vigna mungo HOM05D000071 ORTHO05D000029 8.2e-06 55.5 135 43.7
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 8.2e-06 55.5 127 29.1


User provided reference genes

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