Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 8.4e-73 276.9 141 100.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 2.0e-66 255.8 141 95.7
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 4.3e-61 238.0 141 85.8
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.2e-58 229.9 143 83.2
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 2.6e-58 228.8 140 82.9
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 7.6e-58 227.3 144 81.2
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 7.6e-58 227.3 143 81.8
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-57 226.5 144 81.2
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.8e-57 224.9 137 82.5
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 81.2
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-56 223.4 142 81.7
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.1e-56 223.4 141 80.1
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.1e-56 223.4 141 80.1
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.1e-56 223.4 141 80.9
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.4e-56 223.0 142 80.3
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 1.4e-56 223.0 143 80.4
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.9e-56 222.6 143 80.4
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 4.2e-56 221.5 141 79.4
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 5.4e-56 221.1 142 79.6
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.1e-55 219.2 144 77.8
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.7e-55 218.8 143 79.0
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.5e-55 218.4 146 77.4
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 6.0e-55 217.6 141 79.4
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 6.0e-55 217.6 142 79.6
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 7.9e-55 217.2 144 79.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 77.1
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.0e-54 216.9 142 79.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.3e-54 216.5 146 76.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.8e-54 216.1 144 78.5
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.8e-54 216.1 146 77.4
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.3e-54 215.7 142 78.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.3e-54 215.7 143 82.5
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.9e-54 214.9 144 77.8
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.1e-54 214.5 146 78.1
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 5.1e-54 214.5 146 75.3
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 8.7e-54 213.8 143 79.0
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.5e-53 213.0 144 75.7
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.9e-53 212.6 144 77.1
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.9e-53 212.6 143 76.9
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.9e-53 212.6 150 74.7
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.9e-53 212.6 144 75.7
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.3e-53 211.8 132 82.6
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 3.3e-53 211.8 141 77.3
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.3e-53 211.8 145 75.9
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.3e-53 211.5 144 77.1
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.6e-53 211.1 132 83.3
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.6e-53 211.1 143 77.6
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 7.4e-53 210.7 143 75.5
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 9.6e-53 210.3 145 74.5
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.3e-52 209.9 131 83.2
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.3e-52 209.9 146 75.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.6e-52 209.5 144 74.3
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.6e-52 209.5 144 74.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.1e-52 209.1 144 77.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.1e-52 209.1 145 75.9
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.1e-52 209.1 144 77.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 73.6
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 73.6
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 73.6
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.6e-52 208.4 145 73.8
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 3.6e-52 208.4 144 77.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 4.8e-52 208.0 144 75.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 6.2e-52 207.6 145 75.2
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 6.2e-52 207.6 147 74.8
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 8.1e-52 207.2 144 75.0
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 8.1e-52 207.2 144 79.2
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.1e-51 206.8 145 73.8
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.1e-51 206.8 143 76.9
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 74.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 1.4e-51 206.5 141 75.9
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.8e-51 206.1 141 74.5
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.8e-51 206.1 142 76.8
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.4e-51 205.7 141 74.5
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 3.1e-51 205.3 140 75.7
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 3.1e-51 205.3 139 77.7
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 3.1e-51 205.3 144 72.9
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 4.0e-51 204.9 144 76.4
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 4.0e-51 204.9 144 76.4
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 5.3e-51 204.5 145 73.1
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.3e-51 204.5 141 73.8
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 9.0e-51 203.8 133 79.7
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 9.0e-51 203.8 141 75.2
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.2e-50 203.4 141 76.6
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.5e-50 203.0 144 72.9
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.5e-50 203.0 148 73.0
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.5e-50 203.0 141 75.2
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.5e-50 203.0 141 75.2
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.5e-50 203.0 144 77.1
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.0e-50 202.6 147 70.7
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.0e-50 202.6 141 74.5
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 2.0e-50 202.6 148 70.9
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-50 202.2 147 73.5
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 145 72.4
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 5.8e-50 201.1 170 64.7
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 5.8e-50 201.1 147 70.1
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 5.8e-50 201.1 145 76.6
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.8e-50 201.1 138 74.6
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.6e-50 200.7 143 73.4
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 7.6e-50 200.7 150 74.0
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 9.9e-50 200.3 165 66.7
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.9e-49 198.7 143 72.7
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 4.9e-49 198.0 146 71.2
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 1.4e-48 196.4 110 87.3
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.4e-48 196.4 172 62.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.2e-48 195.3 146 70.5
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.2e-48 195.3 146 69.9
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 7.1e-48 194.1 154 67.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 7.1e-48 194.1 143 71.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 9.3e-48 193.7 145 70.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 9.3e-48 193.7 147 70.1
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 9.3e-48 193.7 147 70.1
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 9.3e-48 193.7 141 72.3
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-47 193.0 119 85.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.5e-47 191.8 147 69.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 8.7e-46 187.2 139 71.2
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 2.5e-45 185.7 220 52.3
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 4.3e-45 184.9 145 67.6
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 9.6e-45 183.7 116 77.6
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 9.6e-45 183.7 113 80.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.1e-44 182.6 105 86.7
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 4.8e-44 181.4 107 84.1
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-43 179.1 116 77.6
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 3.1e-43 178.7 123 71.5
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 8.4e-41 170.6 88 94.3
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 7.9e-39 164.1 89 89.9
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 7.9e-39 164.1 204 50.0
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.3e-38 163.3 88 89.8
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.3e-38 163.3 90 87.8
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.5e-37 159.8 109 75.2
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.2e-34 150.2 98 80.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 5.0e-33 144.8 120 60.8
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 5.1e-30 134.8 108 63.0
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.1e-29 133.7 112 64.3
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 5.9e-26 121.3 108 58.3
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.0e-25 118.2 144 52.1
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 2.7e-23 112.5 63 88.9
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.3e-21 105.5 60 86.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.7e-20 103.2 87 56.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 3.7e-20 102.1 97 53.6
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.4e-18 95.5 89 58.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 6.7e-14 81.3 63 65.1
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.5e-13 80.1 105 41.0
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-13 79.0 113 44.2
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 7.4e-13 77.8 121 43.0
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 2.0e-10 69.7 64 57.8
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 5.9e-10 68.2 48 68.8
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 7.7e-10 67.8 59 64.4
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.1e-08 63.9 35 88.6
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.4e-06 57.0 83 39.8
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.8e-06 56.6 43 65.1
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.8e-06 56.6 43 65.1
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 4.0e-06 55.5 58 58.6
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 4.0e-06 55.5 54 57.4
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 8.8e-06 54.3 104 40.4


User provided reference genes

Program Settings