Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 4.1e-93 344.7 178 100.0
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 7.4e-34 147.9 180 47.8
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.0e-30 137.5 180 43.3
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 1.4e-29 133.7 196 44.4
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 1.0e-27 127.5 188 41.5
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 2.3e-27 126.3 182 42.9
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 1.3e-25 120.6 186 37.1
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 3.7e-25 119.0 130 49.2
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.4e-24 117.1 134 47.0
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.2e-23 114.0 75 69.3
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 1.2e-23 114.0 189 42.9
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 2.0e-23 113.2 132 48.5
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 2.6e-23 112.8 125 48.8
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 3.4e-23 112.5 111 47.7
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 4.5e-23 112.1 155 38.7
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 5.9e-23 111.7 132 46.2
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 1.3e-22 110.5 178 38.2
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 2.2e-22 109.8 189 38.6
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.9e-22 109.4 168 42.3
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 2.9e-22 109.4 192 38.5
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 5.0e-22 108.6 165 40.6
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 5.0e-22 108.6 117 47.0
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 6.5e-22 108.2 82 59.8
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.1e-21 107.5 81 55.6
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.9e-21 106.7 131 45.0
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 5.5e-21 105.1 200 36.5
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 9.4e-21 104.4 123 44.7
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 1.2e-20 104.0 121 47.9
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 1.2e-20 104.0 202 36.1
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.7e-20 102.8 164 40.2
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 3.6e-20 102.4 123 44.7
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 3.6e-20 102.4 172 38.4
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 6.1e-20 101.7 173 40.5
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 7.9e-20 101.3 191 37.2
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.9e-20 101.3 180 39.4
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 5.1e-19 98.6 121 41.3
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 5.1e-19 98.6 140 42.1
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 6.7e-19 98.2 87 55.2
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 6.7e-19 98.2 171 40.9
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.1e-18 97.4 178 36.5
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 1.1e-18 97.4 125 44.8
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.1e-18 97.4 180 38.3
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 1.1e-18 97.4 109 47.7
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.5e-18 97.1 198 33.3
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.5e-18 97.1 180 38.3
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 2.6e-18 96.3 136 43.4
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 7.4e-18 94.7 209 34.0
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 7.4e-18 94.7 197 34.0
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 7.4e-18 94.7 196 35.7
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 7.4e-18 94.7 116 45.7
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 9.7e-18 94.4 179 39.1
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 9.7e-18 94.4 179 39.1
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 1.3e-17 94.0 179 39.1
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 1.3e-17 94.0 179 39.1
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 1.3e-17 94.0 179 39.1
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.3e-17 94.0 197 34.5
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 1.3e-17 94.0 139 40.3
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 1.7e-17 93.6 180 38.9
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 1.7e-17 93.6 178 38.2
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.7e-17 93.6 194 35.1
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.7e-17 93.6 194 35.1
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.2e-17 93.2 189 35.4
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 2.8e-17 92.8 182 38.5
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 3.7e-17 92.4 178 41.0
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 4.8e-17 92.0 179 39.7
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 6.3e-17 91.7 178 39.9
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 6.3e-17 91.7 178 39.9
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 6.3e-17 91.7 178 39.9
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 8.2e-17 91.3 177 39.5
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 1.1e-16 90.9 178 37.1
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 1.1e-16 90.9 92 47.8
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 1.1e-16 90.9 92 47.8
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 1.4e-16 90.5 179 39.7
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 1.4e-16 90.5 196 33.2
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 4.1e-16 89.0 178 36.0
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 2.0e-15 86.7 187 32.1
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.6e-15 86.3 207 34.3
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.6e-15 86.3 190 33.7
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 3.4e-15 85.9 183 38.8
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.4e-15 85.9 179 33.5
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 3.4e-15 85.9 178 35.4
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.9e-15 85.1 190 31.6
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.2e-14 83.2 190 32.1
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 3.8e-14 82.4 173 33.5
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 6.5e-14 81.6 179 33.0
BcaC01g01138 Brassica carinata HOM05D001418 ORTHO05D003753 1.1e-13 80.9 178 36.0
C03p88500 Brassica napus HOM05D001418 ORTHO05D003753 1.1e-13 80.9 178 36.0
BolC3t21160H Brassica oleracea HOM05D001418 ORTHO05D003753 1.1e-13 80.9 178 36.0
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 1.1e-13 80.9 173 34.1
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 1.1e-13 80.9 143 35.0
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.4e-13 80.5 148 38.5
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 1.9e-13 80.1 200 33.0
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.2e-13 79.3 81 42.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 4.2e-13 79.0 180 32.2
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 5.5e-13 78.6 181 32.6
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 7.2e-13 78.2 181 32.6
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 7.2e-13 78.2 81 40.7
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.2e-12 77.4 208 33.2
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.2e-12 77.4 70 48.6
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.2e-12 77.4 70 48.6
BcaB03g12658 Brassica carinata HOM05D001418 ORTHO05D003753 1.6e-12 77.0 178 36.0
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.6e-12 77.0 79 41.8
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.6e-12 77.0 173 32.4
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 2.1e-12 76.6 119 37.8
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 2.1e-12 76.6 172 30.2
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 2.7e-12 76.3 197 33.0
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.7e-12 76.3 185 34.1
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 3.6e-12 75.9 130 35.4
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 4.7e-12 75.5 207 32.9
Potri.007G103000 Populus trichocarpa HOM05D001418 ORTHO05D003753 6.1e-12 75.1 180 36.1
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 8.0e-12 74.7 144 35.4
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 8.0e-12 74.7 136 36.0
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 8.0e-12 74.7 93 44.1
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 1.0e-11 74.3 130 33.8
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.4e-11 73.9 105 43.8
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 1.8e-11 73.6 134 36.6
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 5.2e-11 72.0 105 41.0
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 6.7e-11 71.6 169 32.5
A08p19100 Brassica napus HOM05D001418 ORTHO05D003753 8.8e-11 71.2 166 35.5
BraA08t33872Z Brassica rapa HOM05D001418 ORTHO05D003753 8.8e-11 71.2 166 35.5
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.1e-10 70.9 135 31.9
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 2.6e-10 69.7 173 30.6
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 2.6e-10 69.7 145 35.2
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.3e-10 69.3 60 51.7
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 9.7e-10 67.8 129 34.1
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.3e-09 67.4 183 30.6
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 1.3e-09 67.4 143 33.6
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 1.3e-09 67.4 76 43.4
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 1.7e-09 67.0 147 32.0
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 1.7e-09 67.0 125 34.4
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.2e-09 66.6 151 29.8
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 2.2e-09 66.6 139 31.7
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 2.2e-09 66.6 133 36.8
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 4.8e-09 65.5 143 32.9
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 8.2e-09 64.7 136 31.6
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 8.2e-09 64.7 119 31.9
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 1.1e-08 64.3 82 36.6
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 1.4e-08 63.9 141 32.6
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 3.1e-08 62.8 155 31.6
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 5.3e-08 62.0 187 29.4
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 5.3e-08 62.0 158 32.9
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.2e-07 60.8 155 31.0
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 1.2e-07 60.8 90 35.6
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.0e-07 60.1 178 30.3
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 2.0e-07 60.1 55 52.7
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 5.9e-07 58.5 164 29.3
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 5.9e-07 58.5 183 28.4
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 7.7e-07 58.2 164 30.5
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 7.7e-07 58.2 165 30.9
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.7e-06 57.0 149 31.5
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 2.9e-06 56.2 139 30.9
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 5.0e-06 55.5 66 43.9
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 6.5e-06 55.1 171 26.3


User provided reference genes

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