Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 2.3e-131 472.2 239 100.0
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 9.8e-66 254.2 213 63.8
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.2e-65 253.1 213 63.4
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 1.1e-64 250.8 213 62.0
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 2.6e-58 229.6 217 58.1
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 7.8e-55 218.0 216 56.9
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 3.0e-54 216.1 218 54.1
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 5.1e-54 215.3 259 49.8
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 1.1e-53 214.2 208 56.2
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 4.0e-51 205.7 214 55.6
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 6.8e-51 204.9 218 52.8
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 1.2e-50 204.1 214 54.2
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 3.4e-50 202.6 217 52.5
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 5.8e-50 201.8 218 54.6
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 9.9e-50 201.1 218 54.1
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 1.7e-49 200.3 213 54.0
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 1.4e-48 197.2 213 51.6
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 1.9e-48 196.8 213 53.1
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 4.1e-48 195.7 213 52.1
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 5.4e-48 195.3 208 52.4
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 5.4e-48 195.3 217 51.2
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 5.4e-48 195.3 218 53.2
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.6e-47 193.7 217 51.2
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 3.5e-47 192.6 201 51.7
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 3.5e-47 192.6 210 51.9
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 2.3e-46 189.9 218 49.1
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 3.0e-46 189.5 205 52.2
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 3.0e-46 189.5 216 50.5
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 5.1e-46 188.7 223 48.9
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 9.6e-45 184.5 214 49.5
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.6e-44 183.7 208 50.0
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 3.6e-44 182.6 212 49.1
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 4.7e-44 182.2 174 54.6
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 8.1e-44 181.4 202 52.0
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 1.1e-43 181.0 162 58.6
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 2.4e-43 179.9 251 43.4
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 2.4e-43 179.9 217 48.4
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 9.0e-43 177.9 171 55.6
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.2e-42 177.6 198 52.0
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 3.8e-41 172.6 204 47.5
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 1.4e-40 170.6 206 47.1
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 2.4e-40 169.9 214 51.4
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.2e-40 169.5 178 51.7
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 9.3e-40 167.9 224 46.9
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 9.3e-40 167.9 201 47.8
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 2.7e-39 166.4 207 48.3
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 3.5e-39 166.0 206 46.1
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 6.0e-39 165.2 174 51.7
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 6.0e-39 165.2 210 44.8
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 6.0e-39 165.2 219 44.3
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 7.8e-39 164.9 215 44.2
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 1.7e-38 163.7 201 46.8
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 3.0e-38 162.9 226 45.6
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 6.6e-38 161.8 212 46.7
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.5e-37 160.6 211 45.5
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 1.9e-37 160.2 211 46.4
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 3.3e-37 159.5 211 45.5
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 3.3e-37 159.5 213 46.0
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 5.6e-37 158.7 222 43.2
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 7.3e-37 158.3 207 44.4
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 7.3e-37 158.3 212 46.2
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 7.3e-37 158.3 212 46.2
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 9.6e-37 157.9 214 45.3
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.3e-36 157.5 216 45.8
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 1.6e-36 157.1 222 42.8
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 2.1e-36 156.8 184 44.6
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 1.1e-35 154.5 158 51.9
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.1e-35 154.5 211 44.1
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 1.4e-35 154.1 211 46.0
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 5.3e-35 152.1 183 47.5
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 5.3e-35 152.1 216 44.9
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 9.0e-35 151.4 183 47.0
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 2.0e-34 150.2 211 42.7
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 2.0e-34 150.2 211 42.7
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 2.6e-34 149.8 211 42.7
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 5.8e-34 148.7 227 41.9
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 1.7e-33 147.1 100 66.0
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 3.8e-33 146.0 157 52.2
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 6.4e-33 145.2 225 40.4
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 2.4e-32 143.3 211 43.6
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 3.2e-32 142.9 250 37.2
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 7.1e-32 141.7 103 63.1
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 1.3e-30 137.5 211 41.2
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 8.7e-30 134.8 240 36.7
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 5.6e-29 132.1 194 39.7
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 2.1e-28 130.2 172 44.8
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 4.0e-27 125.9 213 39.0
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 3.2e-24 116.3 219 33.3
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 9.3e-24 114.8 214 35.0
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 1.6e-23 114.0 142 48.6
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 5.1e-22 109.0 123 43.9
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 6.7e-22 108.6 155 42.6
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 4.3e-21 105.9 114 48.2
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 3.7e-20 102.8 183 38.3
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 4.8e-20 102.4 186 34.9
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 8.2e-20 101.7 185 33.5
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 4.5e-18 95.9 226 31.4
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 1.7e-17 94.0 93 51.6
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 4.9e-17 92.4 200 32.0
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 2.5e-16 90.1 177 32.8
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 8.7e-14 81.6 228 28.5
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 1.1e-13 81.3 161 36.6
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 4.3e-13 79.3 128 42.2
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.1e-11 74.7 117 43.6
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 5.3e-11 72.4 92 46.7
SHI11459 Sapria himalayana HOM05D038817 ORTHO05D009062 9.4e-08 61.6 47 72.3


User provided reference genes

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