Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.8e-86 323.2 256 100.0
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.4e-41 173.3 266 66.9
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 4.9e-39 165.6 124 70.2
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 8.4e-39 164.9 267 54.3
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.4e-38 163.3 259 59.5
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.0e-36 157.9 125 64.8
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 2.0e-32 143.7 114 64.0
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 9.9e-32 141.4 123 61.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.1e-30 137.9 122 59.8
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 3.2e-30 136.3 121 57.0
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.0e-28 131.3 109 66.1
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.4e-25 120.9 117 55.6
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.4e-25 120.9 125 52.0
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.4e-25 120.2 125 52.0
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.1e-25 119.8 99 61.6
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 5.3e-25 119.0 117 54.7
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 3.4e-24 116.3 109 56.9
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.4e-24 116.3 99 64.6
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.4e-24 116.3 114 55.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 4.5e-24 115.9 99 63.6
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.6e-24 115.2 112 55.4
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.0e-23 114.8 104 55.8
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.0e-23 114.8 104 55.8
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 6.5e-23 112.1 123 50.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.1e-22 111.3 137 46.0
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.1e-22 111.3 104 54.8
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.5e-22 110.2 112 52.7
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 3.2e-22 109.8 104 54.8
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 5.5e-22 109.0 127 47.2
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.6e-21 107.5 101 55.4
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.6e-21 107.5 118 50.0
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.1e-21 107.1 115 51.3
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.1e-21 107.1 115 51.3
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.7e-21 106.7 128 46.1
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 6.0e-21 105.5 127 44.9
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.9e-21 105.1 112 50.9
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.0e-20 104.8 127 45.7
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.8e-20 104.0 99 58.6
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.8e-20 104.0 112 44.6
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 2.3e-20 103.6 101 57.4
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.5e-19 100.9 122 45.1
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.5e-19 100.1 112 49.1
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 4.3e-19 99.4 119 51.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 5.7e-19 99.0 91 53.8
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 7.4e-19 98.6 96 52.1
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 2.2e-18 97.1 73 63.0
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 2.8e-18 96.7 90 53.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 2.8e-18 96.7 90 53.3
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.8e-18 96.7 128 44.5
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 3.7e-18 96.3 103 52.4
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.7e-18 96.3 99 51.5
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.7e-18 96.3 103 47.6
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 3.7e-18 96.3 125 44.0
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.8e-18 95.9 125 46.4
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 6.3e-18 95.5 114 46.5
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 6.3e-18 95.5 107 47.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 8.2e-18 95.1 103 48.5
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 8.2e-18 95.1 101 51.5
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.8e-17 94.0 118 50.8
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.4e-17 93.6 127 44.1
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 3.1e-17 93.2 125 43.2
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 3.1e-17 93.2 121 43.8
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 5.3e-17 92.4 80 55.0
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.9e-17 92.0 70 61.4
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.2e-16 91.3 110 46.4
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 1.2e-16 91.3 74 56.8
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 1.2e-16 91.3 116 45.7
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 1.2e-16 91.3 107 45.8
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.2e-16 91.3 85 54.1
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 2.6e-16 90.1 87 54.0
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.6e-16 90.1 90 52.2
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.5e-16 89.4 105 43.8
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 5.9e-16 89.0 89 49.4
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 7.7e-16 88.6 91 51.6
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 7.7e-16 88.6 97 48.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.0e-15 88.2 91 48.4
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.3e-15 87.8 91 48.4
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 2.2e-15 87.0 91 50.5
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 2.2e-15 87.0 108 40.7
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 2.9e-15 86.7 109 42.2
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 3.8e-15 86.3 115 45.2
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 5.0e-15 85.9 102 47.1
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 6.5e-15 85.5 86 52.3
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 8.5e-15 85.1 83 48.2
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 8.5e-15 85.1 74 58.1
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 1.1e-14 84.7 89 49.4
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.5e-14 83.6 84 50.0
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.2e-14 82.8 110 41.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 4.2e-14 82.8 91 47.3
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 5.5e-14 82.4 75 56.0
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 7.2e-14 82.0 102 45.1
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.6e-13 80.9 105 48.6
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.6e-13 79.7 102 43.1
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 4.6e-13 79.3 85 47.1
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 6.1e-13 79.0 129 37.2
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.9e-13 78.6 91 45.1
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.0e-12 78.2 93 47.3
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-12 77.8 73 50.7
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.8e-12 77.4 114 42.1
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.3e-12 77.0 86 48.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 8.8e-12 75.1 82 45.1
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 1.1e-11 74.7 94 44.7
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 2.0e-11 73.9 74 51.4
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.0e-11 73.9 128 39.8
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.5e-11 73.6 84 44.0
Duzib147G0063 Durio zibethinus HOM05D003899 ORTHO05D003655 2.5e-11 73.6 99 52.5
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 5.7e-11 72.4 85 43.5
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 7.4e-11 72.0 81 44.4
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 9.7e-11 71.6 91 44.0
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.3e-10 71.2 101 41.6
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.3e-10 71.2 108 39.8
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.7e-10 70.9 84 42.9
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 1.7e-10 70.9 58 55.2
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.2e-10 70.5 109 39.4
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 4.8e-10 69.3 81 43.2
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 4.8e-10 69.3 81 43.2
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 4.8e-10 69.3 91 42.9
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 4.8e-10 69.3 105 42.9
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 8.2e-10 68.6 85 42.4
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.1e-09 68.2 57 54.4
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 1.1e-09 68.2 89 43.8
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.4e-09 67.8 82 46.3
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 1.4e-09 67.8 104 41.3
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.4e-09 67.8 90 42.2
QL09p016294 Quercus lobata HOM05D009119 ORTHO05D003655 1.4e-09 67.8 70 52.9
QL09p016276 Quercus lobata HOM05D009119 ORTHO05D003655 3.1e-09 66.6 70 52.9
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 5.3e-09 65.9 72 51.4
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 6.9e-09 65.5 88 45.5
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 6.9e-09 65.5 71 53.5
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 6.9e-09 65.5 86 38.4
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 6.9e-09 65.5 57 52.6
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.1e-09 65.1 91 40.7
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 9.1e-09 65.1 84 42.9
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 1.2e-08 64.7 81 39.5
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.2e-08 64.7 103 41.7
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 2.6e-08 63.5 115 41.7
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 2.6e-08 63.5 89 43.8
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.6e-08 63.5 82 37.8
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.4e-08 63.2 96 39.6
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 3.4e-08 63.2 97 49.5
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 4.5e-08 62.8 94 38.3
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 5.9e-08 62.4 92 35.9
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 5.9e-08 62.4 50 54.0
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.0e-07 61.6 92 44.6
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 1.3e-07 61.2 75 40.0
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.3e-07 61.2 96 35.4
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 2.9e-07 60.1 99 36.4
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 3.8e-07 59.7 86 38.4
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.8e-07 59.7 81 40.7
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 5.0e-07 59.3 115 32.2
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 6.5e-07 58.9 82 39.0
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 8.5e-07 58.5 87 40.2
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.4e-06 57.8 125 32.8
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 1.9e-06 57.4 105 35.2
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.9e-06 57.4 59 42.4
CiPaw.04G086500 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.5e-06 57.0 38 76.3
PGR042G3889 Punica granatum HOM05D009119 ORTHO05D003655 2.5e-06 57.0 68 48.5
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 3.2e-06 56.6 102 38.2
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 4.2e-06 56.2 88 39.8
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.2e-06 56.2 103 35.0
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.2e-06 56.2 81 38.3
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.2e-06 56.2 108 35.2
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 5.5e-06 55.8 104 36.5
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.5e-06 55.8 115 33.0
Potri.005G160500 Populus trichocarpa HOM05D009119 ORTHO05D003655 7.2e-06 55.5 64 45.3
HPP92_002045 Vanilla planifolia HOM05D003899 ORTHO05D003655 9.4e-06 55.1 78 41.0


User provided reference genes

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