Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 3.1e-40 167.9 80 100.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.4e-24 115.2 79 73.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.7e-20 100.9 81 66.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.0e-19 99.8 78 62.8
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.0e-18 95.5 79 65.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.3e-18 94.7 76 57.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.7e-18 94.0 79 60.8
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 7.4e-18 93.6 75 57.3
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.3e-17 92.8 76 57.9
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.7e-17 92.4 79 59.5
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.8e-17 91.7 78 60.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.8e-17 90.9 72 59.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.4e-16 89.4 72 62.5
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-16 89.0 76 59.2
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-16 89.0 80 53.8
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.8e-16 89.0 80 53.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.0e-16 87.0 78 53.8
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 9.1e-16 86.7 79 60.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.6e-15 85.9 77 57.1
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.7e-15 83.6 74 60.8
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.7e-14 82.4 78 53.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-14 82.0 84 53.6
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.9e-14 81.6 85 56.5
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.9e-14 81.6 85 56.5
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 8.5e-14 80.1 78 53.8
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.9e-13 79.0 75 56.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.9e-13 79.0 74 56.8
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.2e-13 78.2 75 56.0
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 4.2e-13 77.8 75 53.3
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 4.2e-13 77.8 75 57.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.5e-13 77.4 78 51.3
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.2e-13 77.0 74 54.1
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 9.4e-13 76.6 74 55.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-12 75.9 76 56.6
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.8e-11 72.4 70 57.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 3.0e-11 71.6 75 49.3
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 2.6e-10 68.6 70 50.0
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.3e-10 68.2 83 47.0
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.3e-10 68.2 83 47.0
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.4e-10 67.8 83 47.0
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 4.4e-10 67.8 79 50.6
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.4e-10 67.8 83 47.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 5.7e-10 67.4 76 48.7
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 5.7e-10 67.4 52 63.5
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.5e-10 67.0 83 45.8
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 7.5e-10 67.0 52 63.5
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 9.7e-10 66.6 76 47.4
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 9.7e-10 66.6 76 50.0
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 9.7e-10 66.6 75 48.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.3e-09 66.2 75 52.0
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.7e-09 65.9 75 52.0
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-09 65.5 78 44.9
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-09 65.1 76 47.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-09 65.1 76 47.4
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.7e-09 64.7 76 48.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.7e-09 64.7 76 48.7
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 3.7e-09 64.7 71 47.9
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.8e-09 64.3 85 43.5
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.8e-09 64.3 82 42.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.8e-09 64.3 82 42.7
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.8e-09 64.3 82 42.7
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.8e-09 64.3 71 49.3
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.3e-09 63.9 75 48.0
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.3e-09 63.9 75 48.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-08 63.2 75 48.0
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-08 63.2 75 48.0
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.1e-08 63.2 68 47.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-08 63.2 67 43.3
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-08 63.2 66 51.5
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.4e-08 62.8 80 45.0
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-08 62.8 67 46.3
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-08 62.4 75 46.7
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.4e-08 62.0 79 49.4
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 2.4e-08 62.0 75 49.3
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-08 62.0 76 44.7
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-08 62.0 76 44.7
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.4e-08 62.0 79 46.8
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.4e-08 62.0 36 72.2
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.4e-08 62.0 36 72.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.4e-08 62.0 75 45.3
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 2.4e-08 62.0 74 45.9
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.1e-08 61.6 72 47.2
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 5.3e-08 60.8 75 46.7
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 5.3e-08 60.8 75 46.7
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 5.3e-08 60.8 75 46.7
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 7.0e-08 60.5 62 46.8
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 9.1e-08 60.1 63 46.0
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 9.1e-08 60.1 63 42.9
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 9.1e-08 60.1 71 45.1
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-07 59.7 75 46.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-07 59.7 75 46.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-07 59.7 75 46.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-07 59.7 75 46.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-07 59.7 75 46.7
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.2e-07 59.7 71 45.1
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 1.6e-07 59.3 69 50.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-07 59.3 71 45.1
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.7e-07 58.5 69 42.0
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.5e-07 58.2 68 45.6
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.5e-07 57.8 64 48.4
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.9e-07 57.4 81 40.7
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.9e-07 57.4 77 42.9
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 7.7e-07 57.0 75 45.3
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.0e-06 56.6 35 65.7
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-06 56.2 66 48.5
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.3e-06 56.2 81 39.5
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-06 55.8 88 38.6
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-06 55.8 88 38.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.7e-06 55.8 76 44.7
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.7e-06 55.8 71 45.1
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 80 45.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-06 55.5 80 45.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.2e-06 55.5 80 45.0
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.2e-06 55.5 55 49.1
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 2.2e-06 55.5 69 46.4
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 70 47.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 85 45.9
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 2.9e-06 55.1 77 40.3
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-06 54.7 71 46.5
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.8e-06 54.7 73 43.8
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.0e-06 54.3 81 38.3
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 6.5e-06 53.9 76 46.1


User provided reference genes

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