Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 4.3e-101 371.3 188 100.0
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 6.3e-92 340.9 186 92.5
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 4.2e-88 328.2 181 90.1
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 9.4e-88 327.0 181 89.5
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 9.4e-88 327.0 182 89.0
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.6e-87 326.2 182 88.5
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 3.6e-87 325.1 181 87.3
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 4.7e-87 324.7 187 87.7
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 6.1e-87 324.3 185 87.0
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 7.9e-87 323.9 180 88.3
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 1.4e-86 323.2 186 87.1
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.4e-86 323.2 182 86.8
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 1.4e-86 323.2 185 84.9
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 2.3e-86 322.4 179 89.4
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 2.3e-86 322.4 181 88.4
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 2.3e-86 322.4 181 87.8
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 2.3e-86 322.4 186 86.6
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 3.0e-86 322.0 182 88.5
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 3.0e-86 322.0 182 88.5
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 3.0e-86 322.0 182 88.5
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 3.0e-86 322.0 185 83.2
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 3.0e-86 322.0 180 88.3
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 3.0e-86 322.0 180 88.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 3.0e-86 322.0 185 84.9
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 3.9e-86 321.6 186 86.6
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 3.9e-86 321.6 180 87.8
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 3.9e-86 321.6 181 87.8
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 3.9e-86 321.6 179 88.8
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 3.9e-86 321.6 186 86.0
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 5.2e-86 321.2 187 86.1
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 6.7e-86 320.9 185 86.5
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 6.7e-86 320.9 185 86.5
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 6.7e-86 320.9 186 84.4
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 6.7e-86 320.9 182 85.7
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 6.7e-86 320.9 185 86.5
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 8.8e-86 320.5 185 83.8
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 8.8e-86 320.5 181 87.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 8.8e-86 320.5 185 85.9
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 1.1e-85 320.1 184 85.9
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 1.5e-85 319.7 185 85.9
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 1.5e-85 319.7 185 85.9
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 1.5e-85 319.7 182 86.8
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 2.0e-85 319.3 182 85.2
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 2.6e-85 318.9 185 86.5
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.3e-85 318.5 179 87.7
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 4.4e-85 318.2 184 85.3
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 4.4e-85 318.2 183 87.4
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 4.4e-85 318.2 182 85.2
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 5.7e-85 317.8 186 84.9
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 5.7e-85 317.8 183 86.3
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 5.7e-85 317.8 185 83.8
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 7.4e-85 317.4 181 88.4
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 9.7e-85 317.0 184 84.8
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.7e-85 317.0 186 85.5
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 1.3e-84 316.6 186 82.8
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.3e-84 316.6 184 83.7
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 2.2e-84 315.8 181 86.7
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-84 315.8 182 84.6
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 2.2e-84 315.8 185 82.2
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 2.2e-84 315.8 185 82.2
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 2.2e-84 315.8 182 84.6
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 2.8e-84 315.5 187 82.4
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 2.8e-84 315.5 181 86.7
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.7e-84 315.1 182 84.6
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 3.7e-84 315.1 182 85.2
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 3.7e-84 315.1 180 86.1
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 4.8e-84 314.7 182 84.1
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 4.8e-84 314.7 182 85.2
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 4.8e-84 314.7 180 86.1
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 4.8e-84 314.7 180 86.1
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 6.3e-84 314.3 191 84.3
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 6.3e-84 314.3 185 81.6
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 6.3e-84 314.3 182 83.0
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 8.2e-84 313.9 185 84.9
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 8.2e-84 313.9 182 84.6
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 1.1e-83 313.5 182 84.6
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.4e-83 313.2 181 84.0
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 1.4e-83 313.2 186 80.1
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 1.8e-83 312.8 182 83.5
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 1.8e-83 312.8 185 82.2
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.8e-83 312.8 185 82.7
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 2.4e-83 312.4 184 83.7
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 2.4e-83 312.4 182 82.4
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 3.1e-83 312.0 185 80.5
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.1e-83 312.0 182 84.1
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 4.1e-83 311.6 184 82.1
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 5.3e-83 311.2 185 81.6
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.3e-83 311.2 178 86.0
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.3e-83 311.2 178 86.0
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.3e-83 311.2 178 86.0
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 7.0e-83 310.8 185 81.6
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 7.0e-83 310.8 186 84.4
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 7.0e-83 310.8 178 85.4
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.2e-82 310.1 181 83.4
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.2e-82 310.1 181 82.3
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.6e-82 309.7 186 83.9
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 2.6e-82 308.9 178 84.3
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 5.9e-82 307.8 178 84.3
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 7.7e-82 307.4 186 82.8
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 1.0e-81 307.0 185 82.2
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 2.2e-81 305.8 214 73.8
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 3.8e-81 305.1 187 82.9
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 1.1e-80 303.5 185 79.5
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.9e-80 302.8 182 81.9
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.9e-80 302.8 182 81.9
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.9e-80 302.8 184 81.0
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 1.6e-79 299.7 180 83.3
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 2.1e-79 299.3 186 79.0
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.7e-79 298.1 179 81.6
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 8.0e-79 297.4 214 70.6
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.0e-79 297.4 206 74.3
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 3.0e-78 295.4 182 78.6
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 1.5e-77 293.1 169 82.8
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 4.4e-77 291.6 185 79.5
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 5.7e-77 291.2 201 72.1
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 2.2e-76 289.3 166 82.5
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 8.2e-76 287.3 184 79.3
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 2.1e-71 272.7 176 75.0
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 4.7e-71 271.6 165 81.2
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 2.3e-70 269.2 177 71.8
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 8.8e-70 267.3 150 85.3
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 3.4e-69 265.4 178 71.3
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 1.1e-67 260.4 145 89.0
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 1.1e-67 260.4 150 83.3
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 7.0e-67 257.7 150 84.7
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.3e-65 253.4 156 80.8
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 8.6e-65 250.8 149 80.5
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 5.5e-64 248.1 183 70.5
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.2e-63 246.9 159 79.2
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 1.6e-63 246.5 184 64.7
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 1.6e-63 246.5 184 65.2
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 3.4e-61 238.8 145 77.9
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 3.1e-59 232.3 149 80.5
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.1e-56 223.8 185 67.0
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 5.6e-56 221.5 182 61.0
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 1.0e-54 217.2 131 80.9
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 1.4e-54 216.9 117 90.6
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.0e-53 213.0 184 58.2
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 4.4e-53 211.8 117 88.9
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 9.8e-53 210.7 179 59.2
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 1.2e-45 187.2 179 50.8
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.3e-41 173.7 147 57.8
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-41 171.8 184 55.4
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 7.3e-40 167.9 88 93.2
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.7e-39 165.2 104 77.9
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 6.0e-34 148.3 130 60.8
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 1.0e-33 147.5 106 69.8
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 4.3e-32 142.1 90 75.6
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.3e-32 141.4 229 43.7
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 9.5e-32 141.0 97 67.0
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 8.1e-31 137.9 88 78.4
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.9e-29 131.0 69 89.9
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 1.1e-27 127.5 79 81.0
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 1.9e-27 126.7 106 64.2
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 1.9e-27 126.7 106 64.2
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 7.1e-27 124.8 185 46.5
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 6.0e-26 121.7 69 84.1
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 6.2e-23 111.7 105 61.0
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 8.1e-23 111.3 76 69.7
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 9.0e-22 107.8 69 75.4
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 7.8e-18 94.7 55 81.8
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 5.6e-16 88.6 91 54.9
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 3.2e-11 72.8 139 36.7
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.6e-10 70.5 97 44.3
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 5.6e-08 62.0 38 71.1
SalBow5G1940 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.4e-06 57.4 37 81.1
SalBow5G4685 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.4e-06 57.4 37 81.1
Pp3c23_20720 Physcomitrium patens HOM05D004063 ORTHO05D038441 3.1e-06 56.2 196 28.6


User provided reference genes

Program Settings