Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.1e-39 167.9 272 100.0
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 3.0e-18 96.7 178 68.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.7e-18 95.5 178 58.4
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.3e-17 92.8 179 57.5
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 3.6e-16 89.7 178 65.2
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.6e-16 89.7 178 59.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-15 88.2 178 59.6
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.8e-15 87.4 178 72.5
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.5e-14 84.3 178 57.9
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.0e-14 84.0 178 65.7
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-14 84.0 178 62.9
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.0e-14 84.0 179 63.7
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.5e-14 82.8 101 70.3
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 4.5e-14 82.8 101 74.3
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 7.6e-14 82.0 101 62.4
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 7.6e-14 82.0 96 62.5
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 6.4e-13 79.0 97 82.5
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-12 78.2 178 50.6
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.4e-12 77.8 101 61.4
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.4e-12 77.8 101 77.2
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.4e-12 77.0 178 56.7
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.3e-12 75.1 179 57.0
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.3e-12 75.1 101 68.3
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 9.3e-12 75.1 179 61.5
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.1e-11 73.9 178 70.8
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.1e-11 73.9 179 57.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.1e-11 73.9 178 46.1
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.5e-11 73.2 101 58.4
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 4.6e-11 72.8 101 62.4
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.0e-10 71.6 178 57.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.3e-10 71.2 183 54.1
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.8e-10 70.9 179 58.1
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.8e-10 70.9 178 74.7
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 3.0e-10 70.1 180 64.4
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.0e-10 70.1 178 56.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.9e-10 69.7 179 57.0
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.9e-10 69.7 179 59.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.1e-10 69.3 96 60.4
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 6.7e-10 68.9 101 55.4
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.7e-10 68.6 172 64.5
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 8.7e-10 68.6 100 75.0
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 8.7e-10 68.6 101 60.4
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.1e-09 68.2 101 47.5
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.1e-09 68.2 179 60.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.5e-09 67.8 178 69.1
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.5e-09 67.0 101 55.4
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.5e-09 67.0 178 49.4
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 2.5e-09 67.0 101 46.5
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 2.5e-09 67.0 101 45.5
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 3.3e-09 66.6 98 49.0
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.3e-09 66.2 180 52.2
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 9.6e-09 65.1 101 56.4
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.3e-08 64.7 102 68.6
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.6e-08 64.3 179 54.7
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.6e-08 64.3 40 80.0
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.6e-08 64.3 181 42.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.1e-08 63.9 41 80.5
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.1e-08 63.9 133 85.0
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.8e-08 63.5 169 56.8
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.8e-08 63.5 92 57.6
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.8e-08 63.5 41 78.0
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.7e-08 63.2 97 74.2
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 4.8e-08 62.8 101 70.3
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 4.8e-08 62.8 41 75.6
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.8e-08 62.8 41 78.0
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 6.2e-08 62.4 102 52.0
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 6.2e-08 62.4 194 52.6
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 8.1e-08 62.0 41 80.5
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.1e-07 61.6 178 64.6
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.4e-07 61.2 41 75.6
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.4e-07 61.2 99 64.6
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.4e-07 60.5 41 70.7
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.4e-07 60.5 101 39.6
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.4e-07 60.5 41 75.6
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 2.4e-07 60.5 101 64.4
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.4e-07 60.5 41 75.6
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.1e-07 60.1 38 84.2
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.1e-07 60.1 179 44.7
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 4.0e-07 59.7 41 73.2
Cc07_g19150 Coffea canephora HOM05D003347 ORTHO05D003821 4.0e-07 59.7 90 78.9
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.0e-07 59.7 41 75.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.0e-07 59.7 41 75.6
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 6.9e-07 58.9 41 78.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 6.9e-07 58.9 101 56.4
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.2e-06 58.2 41 75.6
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.5e-06 57.8 90 74.4
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.5e-06 57.8 41 75.6
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.5e-06 57.8 94 55.3
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.0e-06 57.4 41 70.7
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.6e-06 57.0 178 52.2
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.6e-06 57.0 101 63.4
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.6e-06 57.0 101 39.6
ClCG02G000100 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.4e-06 56.6 88 77.3
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 3.4e-06 56.6 40 72.5
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 3.4e-06 56.6 41 68.3
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 4.5e-06 56.2 40 70.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 5.8e-06 55.8 101 60.4
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 5.8e-06 55.8 41 68.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 5.8e-06 55.8 40 67.5
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 5.8e-06 55.8 101 49.5
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 5.8e-06 55.8 40 75.0
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.0e-05 55.1 96 56.2
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.0e-05 55.1 40 67.5


User provided reference genes

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