Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 2.4e-102 375.6 192 100.0
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 7.1e-75 284.3 205 75.6
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 9.3e-75 283.9 205 72.2
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.7e-74 282.3 207 74.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 7.9e-74 280.8 201 73.1
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.8e-73 279.6 195 72.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.1e-73 278.1 206 73.8
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.6e-72 274.6 207 71.0
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.8e-71 271.6 200 73.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.1e-70 270.4 195 74.4
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.4e-70 270.0 201 71.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.4e-70 269.2 195 70.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-70 269.2 200 74.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.4e-70 269.2 200 74.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-70 269.2 201 74.6
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.2e-69 266.9 199 67.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-69 266.5 204 70.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.0e-69 266.2 200 73.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-68 263.5 205 66.8
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.7e-68 263.1 216 67.6
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.2e-68 262.7 203 70.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.9e-68 262.3 201 71.6
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 6.5e-68 261.2 206 70.4
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.1e-67 260.4 198 69.2
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.1e-67 260.4 198 69.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.4e-67 260.0 206 66.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-67 260.0 206 66.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 4.2e-67 258.5 206 68.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 4.2e-67 258.5 209 68.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.1e-67 257.7 196 69.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 7.1e-67 257.7 195 68.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.3e-67 257.3 207 71.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 9.3e-67 257.3 197 72.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.1e-66 256.1 198 69.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.7e-66 255.8 206 67.0
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.6e-66 255.0 196 68.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.9e-66 254.2 209 66.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-65 253.1 196 68.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.5e-64 250.0 210 65.7
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.9e-64 249.6 199 62.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.3e-64 248.4 192 68.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.8e-63 245.7 198 63.1
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.7e-63 245.4 206 65.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.8e-63 245.0 203 67.0
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.3e-63 244.6 213 62.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.3e-63 244.6 197 64.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.8e-62 243.0 196 63.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 3.1e-62 242.3 191 66.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.2e-61 240.4 199 63.3
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.0e-61 239.6 214 62.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 5.9e-61 238.0 197 62.4
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 5.9e-61 238.0 217 62.2
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 7.6e-61 237.7 198 63.6
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 7.6e-61 237.7 203 62.1
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 7.6e-61 237.7 223 60.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.3e-60 236.9 191 64.9
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.7e-60 236.5 214 63.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.8e-60 235.3 190 67.4
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 6.5e-60 234.6 194 67.0
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-59 233.8 183 64.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.1e-59 233.8 207 63.3
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.9e-59 233.0 203 59.6
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 3.2e-59 232.3 207 61.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 4.2e-59 231.9 190 67.4
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.2e-59 231.9 215 59.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.2e-59 231.9 202 64.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 7.2e-59 231.1 198 64.6
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.2e-59 231.1 199 64.8
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 7.2e-59 231.1 186 66.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.4e-59 230.7 196 61.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.6e-58 228.4 207 61.4
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 6.1e-58 228.0 194 63.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.1e-58 228.0 200 60.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 7.9e-58 227.6 204 58.8
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.4e-57 226.9 202 61.4
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.8e-57 226.5 212 59.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.3e-57 226.1 202 59.4
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.3e-57 226.1 202 60.9
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.3e-57 226.1 213 59.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 3.9e-57 225.3 200 59.5
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.1e-57 224.9 220 58.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 6.7e-57 224.6 186 61.3
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 6.7e-57 224.6 197 60.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.1e-56 223.8 208 58.2
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.3e-56 222.2 207 58.5
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.7e-56 220.7 214 60.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.3e-55 220.3 195 63.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.3e-55 220.3 213 61.0
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-55 220.3 208 58.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.4e-54 216.9 218 58.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.1e-54 215.3 215 56.3
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 5.3e-54 214.9 212 58.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.5e-53 213.4 202 57.4
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.5e-53 213.4 204 58.8
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.6e-53 212.6 204 56.9
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.2e-52 209.5 213 57.3
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 5.0e-52 208.4 205 58.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 6.5e-52 208.0 225 55.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.5e-51 206.1 202 59.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.5e-51 206.1 229 51.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-50 203.0 222 54.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.1e-50 203.0 207 56.0
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.7e-50 202.6 167 64.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.0e-49 200.7 211 56.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-49 200.7 181 63.0
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-49 200.7 197 58.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.1e-49 198.4 206 55.8
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.6e-48 196.1 185 57.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 7.4e-48 194.5 209 53.1
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.7e-47 192.2 210 52.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.8e-47 191.8 150 70.0
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-47 191.8 162 64.2
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.0e-44 181.8 129 72.9
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 8.5e-44 181.0 184 55.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 5.2e-41 171.8 213 47.9
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.4e-40 168.7 177 53.1
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.3e-39 167.2 200 46.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.7e-39 166.8 208 48.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.4e-38 163.7 169 50.9
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 4.5e-37 158.7 209 43.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-36 157.5 190 45.3
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.7e-36 156.8 164 50.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.2e-36 156.4 190 47.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.5e-35 153.7 209 41.1
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.2e-35 152.5 206 44.2
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.2e-35 152.5 196 42.9
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.5e-35 151.8 198 43.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.0e-33 146.0 140 57.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 5.2e-33 145.2 171 45.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.7e-32 141.7 118 65.3
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 9.7e-32 141.0 196 42.9
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.7e-31 139.0 144 54.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.3e-31 138.3 115 60.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.6e-29 133.7 194 44.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.7e-29 131.3 121 61.2
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.5e-28 128.3 121 60.3
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-27 127.1 140 49.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.2e-26 124.0 176 40.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.6e-26 123.6 103 58.3
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.2e-24 117.5 193 37.8
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.0e-24 116.7 184 41.8
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.5e-24 114.8 170 37.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.8e-23 112.1 96 53.1
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.4e-22 109.8 91 49.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.1e-22 109.4 139 38.1
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.9e-20 102.8 117 55.6
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.9e-20 102.8 184 39.1
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.0e-20 102.1 133 42.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.6e-20 101.7 133 40.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.3e-19 99.4 114 56.1
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.2e-19 98.2 87 50.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.3e-17 93.2 91 47.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 5.2e-17 92.0 113 46.0
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.0e-12 77.8 159 35.2
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 5.6e-11 72.0 98 48.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 6.8e-09 65.1 71 50.7
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 8.9e-09 64.7 76 48.7
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.5e-08 63.9 74 55.4
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 9.8e-08 61.2 69 46.4


User provided reference genes

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