Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 6336.1 3189 100.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4469.5 3238 71.6
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4421.7 3240 71.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4377.4 3287 69.8
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4242.2 3277 68.4
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4226.8 3253 67.8
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4196.4 3246 67.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4187.9 3287 67.3
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4170.2 3262 67.2
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4128.6 3257 66.5
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4092.0 3262 65.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4090.8 3252 65.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4088.9 3252 65.9
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4026.1 3280 65.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3999.9 3293 64.6
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3998.4 3258 64.9
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3976.0 3258 64.5
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3964.8 3258 64.3
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3946.7 3258 64.0
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3945.2 3264 64.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3944.4 3251 63.8
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3940.2 3258 64.1
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3856.2 3212 63.4
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3822.3 3294 62.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3815.8 3263 62.3
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3814.6 3251 62.8
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3808.5 3273 62.0
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3789.6 3266 62.2
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3785.3 3268 61.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3780.3 3247 61.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3776.1 3265 62.1
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3769.5 3249 61.6
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3760.7 3375 60.7
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3728.3 3262 61.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3719.9 3256 61.5
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3694.4 3259 60.9
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3680.6 3262 60.4
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3662.5 3241 61.0
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3614.3 2874 66.0
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3587.3 3268 59.0
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3585.0 3274 59.8
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3564.6 3315 58.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3559.2 3268 58.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3539.2 3254 58.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3535.7 3271 58.7
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3535.0 3271 58.6
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3533.4 3256 58.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3532.7 3282 58.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3520.7 3277 58.1
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3520.3 3266 58.4
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3503.0 3261 58.8
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3498.4 3226 58.8
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3498.0 3273 58.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3495.7 3228 58.8
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3486.0 3225 58.8
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3483.0 3227 58.8
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3473.3 3257 58.3
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3458.3 3320 57.0
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3439.4 3213 58.2
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3420.6 3259 57.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3402.8 3244 56.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3402.5 3262 57.3
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3387.4 3099 58.7
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3369.7 3280 57.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3367.0 3263 57.2
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3338.1 3268 55.7
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3309.6 3209 56.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3301.9 3032 58.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3283.0 3289 55.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3252.6 3253 55.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3167.9 3238 54.9
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3122.0 2697 61.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3031.5 2437 65.6
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2999.5 3092 54.8
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2897.8 2020 74.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2883.6 3005 53.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2741.5 3162 50.6
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2675.2 3258 47.7
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2461.8 2473 54.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2386.7 1600 77.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2265.7 2576 50.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2261.9 1696 69.5
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2188.3 1985 59.2
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2159.0 3344 41.1
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2138.2 2408 49.1
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2083.5 2432 48.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2067.7 1796 62.8
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2058.5 1507 71.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2026.5 1468 72.2
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1974.1 2829 43.1
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1966.4 3285 38.7
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1965.7 1446 71.9
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1962.2 3282 39.3
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1810.8 2979 39.1
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1557.7 1004 79.8
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1486.9 2185 42.6
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1445.6 1250 60.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1438.7 1746 47.2
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1371.3 970 71.4
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1270.4 1514 47.1
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1249.2 1550 47.6
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1242.3 1003 66.2
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1232.6 1500 48.1
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1163.7 839 72.1
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1107.8 835 69.5
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1094.0 1134 56.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1094.0 1492 43.1
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.9e-305 1054.3 892 62.0
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.0e-302 1044.3 972 59.6
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.8e-301 1040.4 3362 28.0
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.9e-296 1022.3 852 62.8
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.6e-272 944.9 753 64.7
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.0e-263 915.6 1298 43.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 7.6e-206 723.4 411 89.1
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.9e-201 708.8 806 47.6
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.3e-200 706.1 441 80.5
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 4.8e-200 704.1 819 49.9
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.8e-184 651.0 829 45.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.8e-168 598.6 924 42.2
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 5.7e-153 547.7 800 43.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.5e-148 533.1 656 47.1
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 3.2e-143 515.4 411 63.5
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-142 511.9 852 39.3
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 1.9e-132 479.6 455 57.8
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 2.5e-132 479.2 794 36.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.1e-130 472.2 327 72.5
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 3.9e-125 455.3 531 50.1
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.5e-124 453.4 816 36.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 5.2e-122 444.9 270 82.2
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.2e-121 443.7 250 88.4
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-119 437.2 579 47.0
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 4.8e-107 395.2 425 51.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 4.8e-107 395.2 301 69.8
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 9.0e-106 391.0 356 61.0
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-102 379.0 626 39.6
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 8.4e-96 357.8 354 54.5
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.5e-94 352.4 215 83.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-93 349.0 244 70.9
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.3e-92 345.9 586 37.5
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 5.8e-89 335.1 247 68.4
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 5.0e-88 332.0 801 31.2
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.9e-85 322.4 747 32.1
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.7e-85 321.6 309 57.3
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-77 297.4 325 50.8
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 5.3e-74 285.4 298 54.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-73 283.5 415 42.2
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.7e-73 281.6 956 27.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 3.9e-61 242.7 155 77.4
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 7.0e-58 231.9 672 28.6
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.8e-51 209.9 387 36.4
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-49 203.0 194 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 9.4e-47 194.9 699 26.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-35 157.1 118 66.1
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.0e-29 138.3 112 64.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.5e-28 134.4 82 78.0
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 4.1e-26 126.3 97 68.0
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 4.6e-25 122.9 109 59.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 8.6e-24 118.6 120 56.7
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.5e-23 117.9 70 82.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.5e-23 117.1 75 81.3
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 9.5e-23 115.2 113 58.4
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.2e-22 114.8 111 50.5
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 3.7e-19 103.2 70 75.7
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.9e-16 93.2 93 47.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 3.1e-13 83.6 64 65.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-11 77.8 187 29.4
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 8.4e-11 75.5 56 73.2
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.0e-08 68.6 57 59.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-08 68.6 45 80.0
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 1.3e-08 68.2 59 59.3
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.3e-08 68.2 57 61.4
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 1.1e-07 65.1 69 47.8
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 2.5e-07 63.9 127 34.6


User provided reference genes

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