Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 0.0e+00 1137.1 543 100.0
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 5.2e-248 860.9 537 75.8
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 2.4e-245 852.0 537 75.8
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 3.9e-235 818.1 547 72.0
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 2.4e-232 808.9 522 72.6
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 3.1e-232 808.5 469 79.7
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 4.0e-232 808.1 544 71.7
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 5.2e-232 807.7 547 71.1
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.3e-230 803.1 532 73.9
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.2e-230 802.4 535 73.1
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 3.8e-230 801.6 539 72.4
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 4.9e-230 801.2 529 72.0
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 2.7e-228 795.4 540 72.4
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 3.0e-227 792.0 488 75.4
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 5.1e-227 791.2 546 71.2
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 2.5e-226 788.9 520 72.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.8e-225 785.4 482 75.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 6.2e-225 784.3 520 72.3
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 5.3e-224 781.2 467 77.3
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 9.0e-224 780.4 522 72.0
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 6.4e-222 774.2 538 70.4
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 8.4e-222 773.9 461 77.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 8.4e-222 773.9 538 70.3
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 9.3e-221 770.4 501 71.9
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.6e-220 769.6 542 68.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.0e-219 766.9 542 69.2
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 1.3e-219 766.5 536 68.7
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 2.1e-217 759.2 443 78.8
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.8e-217 758.1 531 68.5
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 6.2e-217 757.7 472 73.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.2e-217 757.7 543 68.7
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 8.1e-217 757.3 467 74.3
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.4e-216 755.7 472 73.3
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 2.4e-216 755.7 546 69.4
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 3.1e-216 755.4 474 73.2
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 1.5e-215 753.1 472 73.9
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 4.5e-215 751.5 527 68.3
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 4.5e-215 751.5 526 68.4
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.3e-214 750.0 532 66.4
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.9e-214 748.8 501 69.7
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 6.4e-214 747.7 508 69.3
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.9e-213 746.1 502 69.7
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.2e-212 743.4 470 74.3
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 2.1e-212 742.7 532 66.7
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 2.1e-212 742.7 532 66.7
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 2.7e-212 742.3 536 65.9
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 6.0e-212 741.1 459 74.5
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 7.9e-212 740.7 536 65.3
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 7.9e-212 740.7 467 73.7
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.0e-211 738.8 546 65.9
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 3.0e-211 738.8 532 66.4
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.9e-210 736.1 503 69.4
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 4.3e-210 734.9 479 71.6
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 9.6e-210 733.8 487 70.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.8e-209 732.3 460 73.7
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 2.8e-209 732.3 503 69.2
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.8e-209 731.5 525 67.0
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 6.2e-209 731.1 487 70.0
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 6.2e-209 731.1 454 73.3
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.4e-208 729.2 462 73.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 3.1e-208 728.8 472 72.5
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 5.3e-208 728.0 462 73.4
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.2e-207 726.9 509 68.8
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 3.4e-207 725.3 427 76.8
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.7e-206 723.0 538 64.5
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.4e-205 719.9 474 71.9
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.1e-204 716.1 435 77.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 3.5e-204 715.3 468 70.5
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 1.0e-203 713.8 507 67.3
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 2.3e-203 712.6 496 67.9
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 3.0e-203 712.2 496 68.1
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 8.7e-203 710.7 468 71.2
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 1.9e-202 709.5 455 71.6
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 8.2e-201 704.1 449 72.2
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.8e-200 703.0 420 77.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 3.1e-200 702.2 487 68.2
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.0e-199 699.5 478 67.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.6e-199 699.1 420 76.9
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 1.0e-198 697.2 496 66.9
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.3e-198 696.8 496 67.3
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 5.5e-197 691.4 511 65.2
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 1.2e-196 690.3 510 65.7
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 1.2e-196 690.3 521 63.7
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.1e-196 689.5 501 66.9
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 3.5e-196 688.7 479 68.1
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 2.3e-195 686.0 458 70.3
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 6.5e-190 667.9 528 60.0
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.4e-189 666.8 425 71.3
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.1e-188 662.9 430 70.2
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 7.9e-188 661.0 411 75.2
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.3e-187 659.4 503 60.4
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 2.5e-186 656.0 427 71.0
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 1.4e-184 650.2 412 73.8
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 7.9e-180 634.4 421 71.7
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.9e-173 613.2 346 80.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.7e-150 537.0 470 54.5
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 2.1e-148 530.0 459 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 4.4e-146 522.3 445 55.7
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 9.8e-146 521.2 349 68.8
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 4.9e-145 518.8 566 49.8
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.2e-136 489.6 521 46.8
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 8.1e-132 474.9 419 56.3
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 5.1e-118 429.1 362 58.8
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 5.6e-117 425.6 493 48.1
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.2e-111 407.9 317 63.1
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.7e-102 377.5 480 42.7
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.7e-97 360.9 198 81.8
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.9e-96 357.5 452 40.0
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.5e-93 347.8 462 40.7
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 2.0e-90 337.4 234 67.5
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 7.6e-82 308.9 186 76.9
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 4.6e-79 299.7 280 57.9
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 1.5e-74 284.6 451 35.9
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 7.7e-74 282.3 233 60.9
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 4.6e-71 273.1 221 59.7
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 7.4e-69 265.8 150 78.7
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.4e-67 261.5 150 77.3
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.4e-45 186.8 419 32.0
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 7.7e-42 176.0 194 50.0
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 5.8e-21 106.7 75 65.3
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 1.3e-20 105.5 167 39.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.2e-15 89.0 86 52.3
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-14 85.5 89 48.3
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.4e-14 85.5 54 68.5
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 3.4e-13 80.9 57 71.9
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.2e-12 78.2 165 33.9
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.1e-11 75.9 289 24.2
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.2e-11 74.3 349 23.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 5.4e-11 73.6 289 24.2
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 5.4e-11 73.6 294 23.8
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 9.2e-11 72.8 318 23.9
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 9.2e-11 72.8 294 24.1
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.6e-10 72.0 293 24.2
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.6e-10 72.0 318 23.6
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.6e-10 70.5 294 24.1
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 7.8e-10 69.7 269 24.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.0e-09 69.3 294 22.8
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.7e-09 68.6 275 23.6
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.0e-09 67.8 282 24.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.0e-09 67.8 270 22.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 3.0e-09 67.8 162 24.7
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.9e-08 65.1 194 24.7
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.9e-08 65.1 132 22.7
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.5e-08 64.7 251 23.1
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.3e-08 64.3 276 23.2
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 3.3e-08 64.3 200 22.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.3e-08 64.3 137 22.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.1e-07 61.6 133 26.3
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 6.2e-07 60.1 131 23.7


User provided reference genes

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