Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 6.1e-124 447.6 241 100.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.5e-111 405.2 241 87.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 2.8e-108 395.6 241 86.7
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.0e-107 393.7 241 86.7
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.8e-107 392.9 241 86.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.0e-107 392.1 241 86.3
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.0e-107 391.7 241 84.6
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.2e-105 386.0 243 84.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.2e-105 386.0 242 84.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 6.4e-105 384.4 241 83.8
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 8.3e-105 384.0 241 85.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 8.3e-105 384.0 241 83.8
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.1e-104 383.6 241 82.2
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.8e-104 382.9 241 82.6
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.8e-104 382.9 242 83.5
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.4e-104 382.5 241 84.6
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 7.0e-104 380.9 241 83.4
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.2e-103 380.2 242 81.8
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.6e-103 379.8 241 81.7
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.7e-103 379.0 242 83.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.5e-103 378.6 242 83.1
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.9e-103 377.9 241 81.7
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 7.8e-103 377.5 240 82.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.3e-102 376.7 241 83.8
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-102 375.9 241 82.2
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 3.0e-102 375.6 241 81.7
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.0e-102 374.8 244 82.0
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.3e-101 372.1 241 81.3
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.3e-101 371.7 241 82.6
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 4.3e-101 371.7 241 80.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 7.3e-101 370.9 241 81.3
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.2e-100 370.2 241 80.9
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 3.6e-100 368.6 241 79.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.2e-100 367.9 241 80.5
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.0e-99 365.2 242 80.2
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.2e-99 364.8 241 79.7
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 6.8e-99 364.4 241 79.3
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.5e-98 363.2 241 80.1
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.5e-98 363.2 241 79.3
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 2.6e-98 362.5 242 79.3
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 9.8e-98 360.5 242 77.7
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.8e-98 360.5 282 70.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.9e-97 359.0 242 78.9
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 3.7e-97 358.6 244 78.7
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 8.3e-97 357.5 241 78.8
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.4e-96 356.7 242 76.9
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 5.4e-96 354.8 244 77.9
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 5.4e-96 354.8 220 83.6
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.4e-96 354.8 242 78.5
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 5.4e-96 354.8 242 77.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 2.0e-95 352.8 239 79.1
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 2.0e-95 352.8 242 76.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 3.5e-95 352.1 270 71.9
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 76.0
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 6.0e-95 351.3 231 79.2
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.3e-94 350.1 239 79.9
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.3e-94 350.1 242 75.6
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.3e-94 349.4 237 78.5
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.9e-94 348.6 241 77.2
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 3.3e-93 345.5 242 75.2
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 4.3e-93 345.1 238 76.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.3e-93 345.1 241 75.9
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 5.6e-93 344.7 241 75.5
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 7.3e-93 344.4 241 74.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 9.5e-93 344.0 243 74.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.6e-92 343.2 244 75.4
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.8e-92 342.4 241 75.5
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.8e-92 342.4 241 75.5
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.6e-92 342.0 241 74.7
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 6.2e-92 341.3 241 75.1
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 8.1e-92 340.9 242 74.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.4e-91 340.1 245 75.5
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 2.3e-91 339.3 241 74.3
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.3e-91 339.3 241 74.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 5.2e-91 338.2 241 73.4
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 5.2e-91 338.2 241 74.3
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 5.2e-91 338.2 241 74.3
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 5.2e-91 338.2 241 72.6
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.2e-91 338.2 243 76.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 6.8e-91 337.8 222 81.1
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 74.0
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.2e-90 337.0 290 65.9
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.2e-90 337.0 243 76.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.5e-90 336.7 246 73.6
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.5e-90 336.7 244 74.2
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.0e-90 336.3 242 74.8
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.0e-90 336.3 245 74.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 5.8e-90 334.7 242 74.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 73.4
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 9.8e-90 334.0 242 74.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 9.8e-90 334.0 242 74.0
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 73.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.2e-89 332.8 243 74.1
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 72.6
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 8.3e-89 330.9 221 78.7
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.1e-88 330.5 244 73.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.4e-88 330.1 281 67.6
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.9e-88 329.7 197 88.8
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 4.1e-88 328.6 244 73.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.1e-88 328.6 233 74.2
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 5.4e-88 328.2 196 88.8
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 7.8e-87 324.3 243 73.3
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.3e-86 323.6 196 86.7
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.3e-86 322.8 223 75.3
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.0e-86 322.4 228 73.2
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 4.3e-85 318.5 278 64.0
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.5e-85 317.4 199 84.4
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-84 317.0 199 83.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-84 316.2 199 83.4
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 4.7e-84 315.1 243 70.4
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 4.7e-84 315.1 246 70.7
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 8.1e-84 314.3 196 85.7
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.1e-83 313.9 199 83.4
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.1e-83 313.9 196 83.2
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.4e-83 313.5 287 63.4
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.3e-83 312.8 258 69.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.1e-83 312.4 243 69.5
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.0e-83 312.0 243 69.1
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 8.9e-83 310.8 198 81.3
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 1.2e-82 310.5 244 68.4
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.0e-82 309.7 196 81.1
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.4e-82 308.5 258 68.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 9.9e-82 307.4 239 70.3
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.7e-81 305.4 231 71.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 6.4e-81 304.7 244 66.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.4e-80 303.5 196 80.6
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.8e-76 289.3 179 82.1
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 3.4e-74 282.3 196 74.5
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 7.1e-72 274.6 242 62.8
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.7e-71 272.7 220 68.6
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.3e-70 270.4 175 81.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.3e-65 253.8 188 71.8
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.0e-63 245.0 196 70.4
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.3e-62 243.8 223 61.9
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 5.5e-56 221.9 155 76.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 7.4e-53 211.5 135 79.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 4.0e-51 205.7 155 70.3
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-43 181.0 130 70.8
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-43 181.0 176 59.1
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.0e-42 176.8 149 66.4
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.7e-39 166.4 112 76.8
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.7e-36 156.0 223 48.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.4e-35 153.3 198 44.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.9e-33 146.4 215 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 7.9e-31 138.3 239 37.2
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 9.7e-29 131.3 209 39.2
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.2e-26 124.4 236 41.1
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 9.4e-24 114.8 99 62.6
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.1e-21 107.8 75 72.0
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.0e-21 107.1 200 35.0
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 2.0e-21 107.1 198 33.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.3e-17 94.4 178 41.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.3e-17 94.4 63 81.0
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 5.2e-14 82.4 68 64.7
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.7e-12 76.3 64 67.2
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 2.9e-09 66.6 215 27.9
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-07 61.2 41 82.9
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.1e-07 60.5 40 85.0
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 1.8e-06 57.4 92 45.7


User provided reference genes

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