Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 4.3e-130 468.0 238 100.0
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.2e-81 304.3 242 68.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 9.1e-80 300.8 242 67.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.2e-78 296.2 242 66.9
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.9e-78 295.8 242 66.9
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.2e-77 292.4 245 67.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 2.1e-76 289.7 242 67.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 3.0e-75 285.8 242 64.9
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 5.7e-74 281.6 241 65.6
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.7e-73 280.0 243 66.3
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 3.7e-73 278.9 244 65.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.4e-72 276.9 245 66.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 7.0e-72 274.6 245 64.5
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.6e-71 273.5 270 61.5
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.0e-71 273.1 243 67.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.3e-70 270.4 242 62.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.3e-70 270.4 245 62.4
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 3.8e-70 268.9 243 65.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-69 266.9 246 63.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 3.3e-69 265.8 242 61.2
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 5.5e-69 265.0 239 61.9
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 4.0e-67 258.8 241 62.2
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.2e-66 257.3 216 67.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.2e-66 257.3 243 61.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.6e-66 256.1 242 60.7
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.7e-65 253.4 242 61.6
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.7e-65 253.4 242 59.9
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.4e-64 249.6 243 58.4
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.4e-64 248.4 181 71.3
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.7e-63 246.1 243 59.3
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.9e-63 245.0 243 58.8
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.7e-62 243.4 240 59.2
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 6.6e-62 241.5 242 57.4
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.6e-62 241.1 242 56.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.9e-61 240.0 247 56.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.3e-61 239.2 243 56.8
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 5.6e-61 238.4 236 59.3
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 9.5e-61 237.7 209 62.7
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 8.0e-60 234.6 240 57.1
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.0e-59 234.2 243 56.4
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.0e-59 234.2 237 57.4
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.0e-59 234.2 243 55.1
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-59 234.2 237 56.5
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-59 234.2 237 56.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-59 233.8 215 59.5
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.4e-59 233.8 248 56.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-59 233.4 214 59.3
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.8e-59 233.4 242 57.4
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.3e-59 233.0 241 57.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.0e-59 232.3 234 56.8
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 4.0e-59 232.3 223 60.5
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 4.0e-59 232.3 223 60.1
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 5.2e-59 231.9 242 55.8
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 6.8e-59 231.5 242 54.5
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-59 231.1 215 59.5
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 8.9e-59 231.1 239 59.8
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.0e-58 229.9 237 56.1
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 7.5e-58 228.0 294 48.6
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.7e-57 226.9 241 55.6
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.9e-57 226.1 233 54.5
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 3.7e-57 225.7 213 58.7
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.3e-57 224.6 207 59.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.3e-57 224.6 207 59.4
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.4e-56 223.0 236 54.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.1e-56 222.2 239 56.1
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.4e-56 221.9 241 52.7
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-55 218.4 215 56.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.0e-55 218.4 264 53.0
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 6.0e-55 218.4 242 54.5
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 6.0e-55 218.4 242 54.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 7.8e-55 218.0 203 57.6
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.0e-54 217.6 240 55.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.3e-54 217.2 243 54.3
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.7e-54 216.9 249 53.0
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.6e-54 214.5 215 55.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.1e-53 214.2 234 51.7
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.1e-53 214.2 227 55.1
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.9e-53 213.4 231 55.0
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.3e-53 212.6 203 57.1
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 7.3e-53 211.5 281 51.2
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.6e-52 210.3 223 56.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.8e-52 209.5 227 53.3
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.0e-52 208.0 245 53.1
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.8e-51 206.8 240 50.8
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.0e-51 205.7 201 58.2
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 5.8e-50 201.8 231 52.4
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.3e-49 200.7 201 54.7
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-49 199.5 202 57.4
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 3.7e-49 199.1 237 49.8
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.7e-49 199.1 238 52.9
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 6.4e-49 198.4 175 63.4
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 6.4e-49 198.4 265 48.3
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 8.3e-49 198.0 238 50.0
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 3.2e-48 196.1 243 48.6
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 5.4e-48 195.3 212 52.4
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-47 194.1 215 53.0
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 4.6e-47 192.2 245 50.2
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 6.0e-47 191.8 241 51.9
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 7.8e-47 191.4 235 53.6
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.3e-46 190.7 242 47.9
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 3.0e-46 189.5 235 47.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.9e-46 189.1 237 52.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.5e-45 187.2 174 62.1
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 2.5e-45 186.4 238 49.6
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 7.3e-45 184.9 237 48.9
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 9.5e-45 184.5 204 54.4
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 9.5e-45 184.5 240 48.8
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.6e-44 183.7 239 47.7
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.4e-43 180.6 255 48.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-43 180.6 238 47.5
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 2.3e-43 179.9 250 46.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.6e-42 176.4 237 48.1
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 9.9e-42 174.5 222 49.1
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 8.3e-41 171.4 201 52.2
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 5.4e-40 168.7 241 46.9
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.2e-39 167.5 244 45.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.1e-39 166.8 184 55.4
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-39 166.0 174 55.2
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-39 165.6 192 50.0
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.0e-38 164.5 231 45.0
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.3e-38 164.1 233 46.8
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.2e-36 157.5 248 42.7
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 2.8e-36 156.4 203 45.8
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 6.2e-36 155.2 238 43.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 6.8e-35 151.8 116 69.0
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 4.4e-34 149.1 238 43.3
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 4.9e-33 145.6 170 51.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-32 144.4 168 47.6
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-32 142.9 187 47.6
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 5.4e-32 142.1 236 39.4
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 5.1e-30 135.6 109 64.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 5.1e-30 135.6 237 42.2
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-28 129.8 172 49.4
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.8e-27 127.1 204 39.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 7.6e-26 121.7 198 41.9
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.3e-25 120.9 99 70.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.2e-25 120.2 166 45.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.9e-22 109.4 152 44.7
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.6e-22 108.6 190 38.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 2.8e-20 103.2 158 45.6
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.8e-19 100.5 158 44.3
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-16 91.3 100 51.0
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-16 90.9 92 54.3
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-15 87.8 100 49.0
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-15 85.9 92 52.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 7.9e-15 85.1 157 37.6
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-14 84.3 121 43.8
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.3e-14 84.3 84 50.0
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.3e-13 79.7 117 42.7
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 2.1e-12 77.0 89 52.8
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.8e-10 68.9 50 78.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.0e-09 68.2 39 89.7
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.0e-09 68.2 84 45.2
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-09 67.4 71 52.1
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-09 67.4 71 52.1
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-09 66.6 96 47.9


User provided reference genes

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