Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 0.0e+00 1149.0 670 100.0
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 6.5e-192 674.9 678 63.3
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.5e-185 652.5 676 63.2
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.4e-178 630.6 677 57.0
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 3.1e-173 612.8 739 55.9
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 4.1e-170 602.4 690 54.6
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.7e-169 599.7 729 51.7
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.5e-169 599.4 699 52.9
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.0e-169 598.6 731 51.7
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 4.4e-164 582.4 723 52.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 4.6e-161 572.4 695 51.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.0e-160 571.2 684 54.5
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.7e-158 562.4 686 51.6
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.1e-158 561.6 696 51.7
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.1e-157 561.2 717 53.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.3e-157 560.1 692 57.1
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.1e-157 559.7 696 51.4
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.2e-155 553.5 682 51.3
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 7.1e-154 548.5 691 51.5
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 3.5e-153 546.2 688 51.3
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.9e-151 540.4 684 50.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 4.0e-149 532.7 691 48.3
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.4e-148 529.3 684 53.1
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.3e-147 527.7 679 49.9
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.4e-146 524.2 692 50.0
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.4e-146 524.2 699 48.6
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 8.7e-144 515.0 674 48.8
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 8.7e-144 515.0 697 47.1
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.9e-143 513.8 675 49.2
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.9e-143 513.8 709 47.8
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.6e-142 510.8 697 49.1
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.1e-142 510.4 695 47.9
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 8.1e-142 508.4 691 49.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.3e-139 501.1 701 51.8
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.9e-138 497.3 665 51.6
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.2e-138 496.5 698 47.7
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 9.3e-138 495.0 695 47.8
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 4.6e-137 492.7 437 64.3
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.0e-136 491.5 678 46.3
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 3.0e-136 490.0 690 48.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 3.0e-136 490.0 697 46.2
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.1e-136 489.2 722 46.5
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 7.4e-135 485.3 699 46.2
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.8e-134 483.4 716 46.4
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.1e-133 481.5 390 66.4
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.4e-133 480.3 688 46.8
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 3.1e-133 479.9 668 47.3
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 6.9e-133 478.8 694 46.0
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 9.0e-133 478.4 701 46.6
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.5e-132 477.6 699 45.5
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.6e-132 476.9 696 46.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 5.8e-132 475.7 692 46.0
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 9.9e-132 474.9 686 47.1
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 3.8e-131 473.0 695 47.3
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 4.9e-131 472.6 686 48.1
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 8.4e-131 471.9 704 46.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.1e-130 471.5 701 44.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.1e-130 471.5 704 46.7
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.1e-130 471.5 697 45.2
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 3.2e-130 469.9 695 44.7
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 7.1e-130 468.8 722 43.1
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-128 464.5 335 74.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 3.9e-128 463.0 684 45.6
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 4.3e-127 459.5 676 46.7
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 7.4e-127 458.8 704 44.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.2e-126 455.7 383 62.9
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.0e-125 453.0 708 44.1
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.2e-124 451.4 700 42.7
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.6e-124 450.3 719 43.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.0e-123 448.4 342 70.5
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.3e-123 448.0 694 42.9
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.7e-123 447.6 383 62.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.5e-123 445.7 699 43.1
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.2e-122 443.4 683 44.7
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.2e-122 443.4 685 44.2
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 7.1e-122 442.2 704 42.6
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.3e-119 433.3 672 44.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.3e-119 433.0 682 44.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.4e-116 423.3 659 43.4
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 5.0e-115 419.5 688 42.0
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 6.5e-115 419.1 663 42.7
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 9.3e-114 415.2 686 42.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.2e-113 414.8 390 61.8
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.7e-113 413.7 721 40.5
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 6.3e-110 402.5 445 54.6
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.8e-109 401.0 650 41.7
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.5e-107 392.5 699 41.9
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.7e-105 387.1 495 50.3
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 7.9e-105 385.6 689 41.7
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.8e-104 384.4 454 52.9
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 3.0e-104 383.6 631 41.2
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.7e-104 382.5 700 42.4
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.3e-103 379.8 407 55.8
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.7e-103 379.4 365 60.3
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.4e-103 379.0 702 41.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.4e-101 374.8 691 40.4
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.2e-99 367.5 715 39.9
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 3.2e-98 363.6 537 45.6
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 9.4e-98 362.1 691 39.9
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 6.7e-96 355.9 493 46.2
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.1e-89 334.3 395 50.6
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 5.2e-88 329.7 672 37.8
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 5.9e-76 289.7 435 44.1
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 2.9e-75 287.3 484 44.0
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.0e-59 233.4 218 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.1e-58 232.3 319 43.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 2.8e-57 227.6 270 51.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.3e-56 224.6 286 50.7
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.4e-53 215.3 472 35.6
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.6e-52 210.3 352 39.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.2e-49 202.2 362 39.0
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 4.0e-48 197.2 481 38.0
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.3e-46 192.2 326 36.5
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-45 189.1 125 72.0
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.0e-43 181.0 159 61.6
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 2.5e-42 177.9 509 31.2
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 4.3e-42 177.2 192 52.6
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.2e-37 161.0 111 74.8
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 5.4e-37 160.2 117 65.8
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.2e-37 159.5 111 68.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 2.7e-36 157.9 117 63.2
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 7.8e-36 156.4 112 74.1
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.0e-35 156.0 490 31.6
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 7.3e-34 149.8 112 65.2
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.9e-30 137.9 89 74.2
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 6.4e-30 136.7 356 32.0
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-28 132.5 140 58.6
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 5.1e-27 127.1 90 71.1
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-26 125.6 140 56.4
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-26 125.2 139 56.8
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 2.1e-25 121.7 91 70.3
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.0e-23 115.2 110 50.0
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.3e-22 112.5 224 33.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 6.4e-22 110.2 79 74.7
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 6.0e-20 103.6 342 28.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 5.1e-19 100.5 424 28.5
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-17 95.9 109 47.7
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.9e-10 72.0 54 66.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.4e-07 61.2 52 53.8
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 1.7e-06 58.9 60 56.7


User provided reference genes

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