Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 3.3e-209 731.5 371 100.0
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.6e-101 371.3 376 59.8
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 9.5e-100 367.9 376 59.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.6e-92 342.0 376 55.1
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.7e-88 329.3 371 53.1
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.4e-87 327.4 382 53.4
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 4.1e-87 325.9 375 51.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 9.2e-87 324.7 375 52.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-86 324.3 384 52.1
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.3e-85 320.9 384 51.0
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.7e-85 320.5 363 53.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.5e-84 317.4 388 52.3
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.6e-83 313.9 381 49.9
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.1e-82 311.2 399 48.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 7.5e-81 305.1 333 53.8
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.3e-80 304.3 382 50.3
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 6.4e-80 302.0 372 50.5
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 7.8e-78 295.0 367 52.3
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 9.5e-76 288.1 372 48.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.6e-75 286.2 373 49.1
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 6.8e-74 282.0 379 47.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.6e-73 280.0 373 48.0
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.3e-72 277.7 386 47.9
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.2e-72 276.9 377 47.2
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 8.4e-72 275.0 387 48.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 8.4e-72 275.0 387 47.5
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.4e-71 272.3 393 45.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.2e-71 271.6 372 48.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.2e-71 271.6 372 48.1
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 9.2e-71 271.6 372 48.1
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.0e-70 268.9 383 47.0
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.1e-68 264.6 313 51.8
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.9e-68 263.8 390 44.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.1e-67 258.5 381 46.2
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.1e-67 258.5 381 46.5
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.4e-66 256.9 172 74.4
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.9e-66 255.0 381 45.9
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.9e-66 255.0 376 43.4
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.9e-64 249.2 377 43.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 4.9e-64 249.2 377 43.5
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.1e-63 248.1 381 44.6
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.0e-61 240.0 389 43.4
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.6e-60 235.0 344 45.9
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.4e-58 231.1 367 41.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 6.9e-58 228.8 375 42.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.2e-56 223.8 379 41.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.2e-54 218.0 382 39.5
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.3e-52 209.9 362 39.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.3e-52 209.5 359 42.3
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.6e-51 207.6 369 39.3
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.6e-51 206.5 388 37.9
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.4e-50 204.5 370 39.7
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 9.0e-50 201.8 369 38.2
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.6e-49 200.3 384 38.0
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.1e-47 194.9 370 39.2
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 4.2e-47 193.0 366 38.5
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 4.2e-47 193.0 348 40.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 7.1e-47 192.2 366 39.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 7.1e-47 192.2 366 39.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 7.1e-47 192.2 366 39.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.2e-46 191.4 366 37.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.3e-45 188.0 327 40.4
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.5e-44 183.7 357 38.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.3e-44 183.3 367 38.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.3e-44 183.3 350 38.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.3e-44 183.0 356 38.2
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.3e-43 181.4 367 38.7
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-43 181.4 353 37.1
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-43 180.6 368 38.0
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-43 180.6 378 34.9
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 2.1e-43 180.6 378 34.9
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.8e-43 180.3 370 39.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 8.1e-43 178.7 297 39.7
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 6.9e-42 175.6 373 37.8
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 2.0e-41 174.1 384 35.2
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 4.9e-40 169.5 147 61.2
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 4.9e-40 169.5 147 61.2
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.9e-40 169.5 381 33.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 8.4e-40 168.7 356 36.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 4.2e-39 166.4 365 35.3
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 5.5e-39 166.0 355 35.2
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 7.1e-39 165.6 360 34.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 7.1e-39 165.6 147 60.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 7.1e-39 165.6 147 60.5
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 7.1e-39 165.6 360 37.8
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 9.3e-39 165.2 374 33.2
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 6.0e-38 162.5 148 56.1
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 7.9e-38 162.2 363 34.2
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.9e-37 159.8 371 33.2
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 5.1e-37 159.5 381 35.2
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.7e-37 159.1 366 33.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 6.7e-37 159.1 365 36.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.5e-36 157.1 373 35.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 4.3e-36 156.4 200 48.0
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 7.4e-36 155.6 372 34.4
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 7.4e-36 155.6 376 34.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 9.6e-36 155.2 375 35.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.6e-35 154.5 373 35.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.6e-35 154.5 365 35.3
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-35 153.7 368 34.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 3.7e-35 153.3 161 52.2
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.1e-34 151.8 372 32.8
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.4e-34 151.4 356 32.9
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.1e-34 149.8 366 34.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 9.0e-34 148.7 367 34.1
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-33 147.5 367 33.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.0e-32 145.2 156 50.6
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.7e-32 144.4 177 47.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.7e-32 144.4 367 36.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.1e-31 141.7 409 31.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.2e-31 139.8 263 38.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 5.5e-31 139.4 379 32.2
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.5e-31 139.4 288 36.5
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 9.3e-31 138.7 380 34.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 9.3e-31 138.7 374 33.2
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.2e-30 138.3 360 36.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.6e-30 137.9 364 34.1
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.1e-30 137.5 417 30.2
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 4.6e-30 136.3 133 54.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.1e-30 136.0 366 32.8
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.3e-29 134.8 364 33.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.0e-29 133.7 359 32.9
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 4.8e-27 126.3 159 44.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 3.2e-23 113.6 361 29.6
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.2e-22 111.7 360 29.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-22 111.7 344 29.4
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 3.6e-22 110.2 115 48.7
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.8e-19 99.8 148 38.5
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.8e-18 97.8 110 50.0
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 2.2e-16 90.9 354 28.0
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.9e-16 90.5 89 55.1
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.2e-14 85.1 158 36.7
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 6.1e-14 82.8 284 31.0
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 6.7e-13 79.3 156 35.3
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 8.8e-13 79.0 102 40.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.0e-12 77.8 276 34.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.8e-11 73.2 375 27.7
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.0e-08 65.5 141 31.9
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-08 64.7 136 33.8
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 3.8e-08 63.5 226 31.0
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 8.5e-08 62.4 101 37.6
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.2e-07 60.5 150 29.3
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 7.2e-07 59.3 75 42.7
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.2e-06 58.5 128 33.6
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 4.7e-06 56.6 145 27.6
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 8.0e-06 55.8 167 26.3


User provided reference genes

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