Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.0e-205 719.2 451 100.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.1e-145 519.2 454 76.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.8e-124 450.3 466 65.9
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.2e-118 429.1 470 63.6
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 5.5e-118 428.7 471 62.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.3e-116 423.3 462 62.3
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 3.0e-116 422.9 465 61.5
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 6.7e-116 421.8 468 61.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 3.3e-115 419.5 485 60.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.2e-114 416.8 468 62.0
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-111 407.9 461 64.0
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-111 407.5 425 63.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.0e-111 405.6 486 54.9
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.4e-110 404.1 461 63.8
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 9.4e-110 401.4 451 58.5
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.1e-109 400.2 461 63.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.7e-109 399.1 474 59.5
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.3e-108 396.7 483 58.4
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-107 394.4 472 57.8
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.4e-107 392.5 502 57.2
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 3.7e-106 389.4 482 56.0
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.3e-106 388.7 470 56.0
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.1e-105 387.9 461 57.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.1e-105 387.9 491 56.0
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.4e-105 387.5 431 64.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 5.3e-105 385.6 460 61.1
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 7.0e-105 385.2 457 55.6
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.2e-104 384.4 458 53.9
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.6e-104 384.0 477 58.7
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.0e-103 381.3 467 60.0
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.9e-103 379.8 339 64.3
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.1e-101 373.6 467 58.7
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.7e-101 373.2 460 53.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.6e-101 372.9 304 69.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-100 369.8 454 54.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.0e-100 369.4 469 56.7
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 8.8e-100 368.2 472 57.0
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.2e-99 367.9 257 72.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.6e-99 366.7 244 76.2
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 7.5e-99 365.2 235 79.6
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.5e-99 365.2 454 54.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 2.2e-98 363.6 455 50.5
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 8.3e-98 361.7 248 73.0
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.1e-97 361.3 458 52.0
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.4e-97 360.9 288 67.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.8e-97 360.5 248 72.6
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.4e-97 360.1 454 53.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 3.1e-97 359.8 470 54.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.0e-97 358.6 462 57.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 9.1e-97 358.2 474 55.3
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.2e-96 357.8 474 54.9
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.0e-96 357.1 474 55.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.7e-96 356.7 288 65.6
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.7e-96 356.7 474 53.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 7.7e-96 355.1 485 52.4
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.7e-95 354.0 388 57.0
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.9e-95 353.2 479 54.7
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.9e-95 353.2 455 55.2
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.8e-95 352.8 258 69.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 6.5e-95 352.1 485 53.8
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 8.5e-95 351.7 474 53.6
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 8.5e-95 351.7 476 52.3
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.5e-94 350.9 466 51.3
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.9e-94 350.5 444 53.4
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 4.2e-94 349.4 457 52.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 5.5e-94 349.0 458 54.6
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.6e-93 347.4 249 70.3
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.6e-93 347.4 249 70.3
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.1e-93 347.1 468 54.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.7e-93 346.7 474 54.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 4.7e-93 345.9 463 51.6
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 4.0e-92 342.8 478 53.3
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 8.8e-92 341.7 391 55.0
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.2e-91 341.3 465 53.1
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.5e-91 340.9 456 52.2
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.6e-91 340.1 336 65.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.4e-91 339.3 406 53.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 5.7e-91 339.0 280 66.8
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.7e-90 336.3 522 51.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.1e-89 334.7 516 51.9
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.4e-89 334.3 479 50.7
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.1e-89 333.2 455 57.6
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 4.1e-89 332.8 466 56.0
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 7.0e-89 332.0 487 54.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.3e-87 327.0 447 48.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.9e-87 326.6 508 49.6
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.9e-87 326.6 393 52.4
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.9e-87 326.6 509 49.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.1e-86 324.7 230 70.0
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.9e-86 323.9 395 57.5
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.2e-86 322.8 265 65.3
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 4.2e-86 322.8 418 52.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.5e-86 322.4 245 66.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.2e-85 321.2 398 51.8
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.1e-85 320.5 472 50.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-84 318.2 267 65.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 8.9e-84 315.1 298 58.7
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.6e-83 313.5 450 45.3
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.6e-83 313.5 337 54.0
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.4e-83 313.2 495 49.1
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.4e-83 313.2 417 49.2
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 9.8e-83 311.6 461 51.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 4.9e-82 309.3 497 48.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.8e-81 307.4 247 64.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.8e-81 307.4 379 50.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 9.2e-81 305.1 466 47.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-80 304.7 471 52.4
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.2e-80 304.7 386 48.2
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.6e-80 304.3 343 52.2
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.8e-80 302.0 494 50.8
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.3e-79 301.2 455 45.7
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.9e-79 300.1 213 72.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.3e-78 296.2 478 46.7
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.9e-74 282.7 265 56.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.6e-72 277.7 303 53.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.0e-72 277.3 485 48.0
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 5.6e-70 269.2 482 46.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 6.8e-68 262.3 242 54.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 4.4e-51 206.5 291 42.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.3e-47 194.9 249 44.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 7.3e-46 189.1 312 39.4
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 3.1e-44 183.7 252 38.9
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 9.9e-43 178.7 112 80.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 5.6e-38 162.9 339 33.3
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 3.1e-36 157.1 242 38.0
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.5e-35 153.3 336 37.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 7.6e-35 152.5 234 40.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.7e-34 151.4 169 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 5.4e-33 146.4 216 40.3
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-32 145.2 89 75.3
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.1e-30 138.7 227 37.9
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.3e-28 129.8 222 34.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-27 128.3 218 33.5
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.7e-26 124.8 290 43.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 8.4e-26 122.5 225 33.8
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.5e-22 110.9 220 34.1
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.6e-21 108.2 176 39.2
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.1e-20 105.5 294 28.6
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.8e-20 104.8 273 43.2
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 4.6e-16 90.1 130 40.8
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 3.9e-15 87.0 125 39.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.6e-13 81.6 211 30.3
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 3.1e-12 77.4 105 43.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 6.9e-12 76.3 118 42.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 9.0e-12 75.9 105 44.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 5.0e-10 70.1 107 41.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 6.5e-10 69.7 141 34.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-09 68.9 122 42.6
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.9e-09 68.2 178 29.2
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 7.2e-09 66.2 54 46.3
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.7e-08 64.3 43 53.5


User provided reference genes

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