Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 5.4e-90 334.3 172 100.0
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.8e-62 242.3 169 77.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.1e-61 240.4 169 75.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.1e-61 240.4 169 75.7
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.6e-60 235.7 172 75.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.4e-60 235.3 168 73.2
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.8e-60 234.6 171 71.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 7.6e-60 234.2 180 69.4
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 7.6e-60 234.2 168 70.8
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.3e-59 233.4 172 72.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.9e-59 232.3 173 71.7
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.9e-59 232.3 183 68.9
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.8e-59 231.9 170 71.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 2.4e-58 229.2 172 70.9
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.2e-58 228.8 176 71.0
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 9.3e-58 227.3 176 70.5
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-57 226.5 172 69.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.6e-57 226.5 174 69.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 2.7e-57 225.7 170 71.8
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 6.0e-57 224.6 171 70.2
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.7e-56 223.0 173 68.2
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.7e-56 223.0 184 68.5
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.7e-56 223.0 184 68.5
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.7e-56 223.0 183 65.6
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.3e-56 222.6 186 66.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-56 222.2 175 69.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.0e-56 222.2 167 69.5
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.0e-56 222.2 201 63.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.9e-56 221.9 178 69.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.9e-56 221.9 176 69.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.9e-56 221.9 175 69.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.1e-56 221.5 176 69.3
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.1e-55 220.3 169 68.0
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.5e-55 219.9 180 67.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-55 219.5 170 68.2
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-55 219.2 171 68.4
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-55 219.2 171 68.4
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-55 219.2 171 68.4
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.3e-55 218.8 181 69.1
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.3e-55 218.4 168 69.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.3e-55 218.4 175 71.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 7.3e-55 217.6 186 64.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.3e-55 217.6 182 68.1
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.3e-55 217.6 174 67.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.6e-55 217.2 171 69.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.6e-55 217.2 167 68.9
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-54 216.5 184 63.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.8e-54 215.7 178 67.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.8e-54 215.7 175 70.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.8e-54 214.9 174 67.2
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 6.2e-54 214.5 198 59.6
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.2e-54 214.5 178 68.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 8.1e-54 214.2 177 68.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-53 213.8 170 67.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.1e-53 213.8 169 67.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.1e-53 213.8 171 67.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.1e-53 212.2 176 66.5
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.1e-53 212.2 167 68.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.3e-53 211.5 177 67.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-53 211.5 170 67.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 6.9e-53 211.1 167 65.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 9.0e-53 210.7 179 61.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.2e-52 210.3 182 64.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.4e-52 208.8 167 65.3
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 4.5e-52 208.4 132 77.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.8e-52 208.0 171 66.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 9.9e-52 207.2 170 65.3
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.7e-51 206.5 187 60.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.2e-51 206.1 191 59.2
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.2e-51 206.1 178 67.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-51 206.1 178 67.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.2e-51 206.1 178 67.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.8e-51 205.3 177 66.7
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 3.8e-51 205.3 170 64.7
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 4.9e-51 204.9 177 66.1
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 4.9e-51 204.9 192 59.4
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 4.9e-51 204.9 178 65.7
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 4.9e-51 204.9 175 66.3
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 8.4e-51 204.1 147 74.1
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-50 203.8 173 64.2
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.9e-50 203.0 189 62.4
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.4e-50 202.6 179 61.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.2e-50 202.2 175 65.1
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.2e-50 201.8 176 61.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 5.4e-50 201.4 169 65.1
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 7.1e-50 201.1 191 59.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 9.3e-50 200.7 190 60.5
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.2e-49 200.3 176 64.8
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.2e-49 200.3 171 63.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.5e-49 198.7 178 65.2
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 4.6e-49 198.4 177 65.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 6.0e-49 198.0 176 63.1
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.3e-48 196.8 202 55.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.0e-48 195.7 204 57.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 5.1e-48 194.9 176 63.6
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 8.7e-48 194.1 179 62.6
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-47 193.4 187 59.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 4.3e-47 191.8 174 62.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.6e-47 191.4 170 64.1
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.3e-46 190.3 137 71.5
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.8e-46 189.1 168 58.3
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 6.2e-46 188.0 186 59.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.2e-46 188.0 180 59.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.1e-45 187.2 151 68.2
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-45 186.8 177 60.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 9.0e-45 184.1 190 57.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.5e-44 183.3 174 61.5
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.5e-44 183.3 177 59.3
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.5e-44 183.3 174 61.5
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.3e-43 180.3 149 69.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.4e-43 177.9 120 71.7
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.9e-42 176.4 170 60.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 4.2e-42 175.3 173 58.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.2e-41 173.7 170 60.6
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.4e-37 160.2 191 50.8
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 3.1e-37 159.1 131 60.3
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.0e-37 158.7 175 56.6
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.5e-36 156.8 138 65.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 8.4e-35 151.0 188 50.5
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-34 150.6 90 81.1
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 3.2e-34 149.1 144 59.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.7e-33 146.0 110 68.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 9.7e-31 137.5 102 66.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.3e-30 137.1 111 62.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.5e-28 130.2 112 57.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.0e-28 129.8 109 60.6
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.4e-28 129.0 106 62.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.4e-28 129.0 168 48.2
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.4e-28 129.0 103 62.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 7.6e-28 127.9 103 61.2
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.2e-27 126.3 95 68.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.5e-26 122.9 126 50.8
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.2e-26 122.5 73 83.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.2e-26 122.1 103 60.2
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 7.2e-26 121.3 96 66.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-24 116.7 93 63.4
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.0e-24 115.9 101 56.4
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.3e-23 112.5 121 53.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.1e-21 107.5 112 52.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 2.4e-21 106.3 80 63.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.3e-19 100.5 98 52.0
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.3e-19 100.5 89 59.6
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 6.5e-19 98.2 73 65.8
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-18 97.1 101 52.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.5e-18 96.3 64 78.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.5e-18 96.3 88 62.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-17 94.0 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.7e-17 92.0 113 45.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.1e-17 91.7 96 45.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.4e-15 84.7 101 46.5
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.2e-14 83.2 152 43.4
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.9e-10 70.1 137 30.7


User provided reference genes

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