Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.2e-189 666.4 353 100.0
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.7e-120 436.0 352 67.0
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 3.9e-119 432.2 352 65.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.0e-116 422.2 353 65.7
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 3.2e-113 412.5 358 64.2
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 5.4e-113 411.8 358 64.2
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 7.1e-113 411.4 354 63.0
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 1.1e-110 404.1 326 65.6
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 8.1e-109 397.9 339 63.1
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 4.0e-108 395.6 302 67.5
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 6.9e-108 394.8 359 59.1
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.2e-107 394.0 330 61.8
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 9.9e-107 391.0 344 62.5
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 1.7e-106 390.2 341 61.9
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.4e-106 387.9 353 60.6
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.1e-105 387.5 345 62.6
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 5.5e-105 385.2 342 61.7
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.7e-104 382.9 373 56.6
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 3.5e-104 382.5 344 59.0
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.3e-103 380.6 335 59.7
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.8e-103 380.2 329 59.9
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 2.3e-103 379.8 331 63.1
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 3.0e-103 379.4 329 61.4
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 3.0e-103 379.4 353 59.2
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 3.9e-103 379.0 352 57.7
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 5.1e-103 378.6 354 59.6
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 8.7e-103 377.9 328 59.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 8.7e-103 377.9 328 59.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 8.7e-103 377.9 344 60.5
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.1e-102 377.5 351 58.4
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 9.6e-102 374.4 346 59.8
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.3e-101 374.0 332 59.6
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.6e-101 373.6 324 63.0
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 3.7e-101 372.5 338 60.7
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 4.8e-101 372.1 335 58.5
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 6.2e-101 371.7 327 61.5
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 5.3e-100 368.6 345 60.3
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.9e-100 368.2 346 57.8
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.9e-100 368.2 346 57.8
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.9e-100 368.2 346 57.8
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.9e-100 368.2 346 57.8
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 9.0e-100 367.9 335 60.9
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 9.0e-100 367.9 352 58.5
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 3.4e-99 365.9 335 58.8
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 4.5e-99 365.5 355 58.3
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 7.6e-99 364.8 351 56.7
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.7e-98 363.6 348 58.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 3.8e-98 362.5 352 56.8
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 8.4e-98 361.3 337 57.0
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 8.4e-98 361.3 334 57.8
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 3.2e-97 359.4 348 58.3
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 4.2e-97 359.0 331 58.0
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 7.1e-97 358.2 344 59.6
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.2e-96 357.5 331 57.7
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.6e-96 357.1 348 56.9
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.6e-96 357.1 347 55.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.1e-96 356.7 349 59.3
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 3.5e-96 355.9 346 56.1
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 6.0e-96 355.1 346 56.1
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.3e-95 354.0 350 58.6
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.8e-95 353.6 325 60.3
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 5.1e-95 352.1 357 53.8
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.3e-94 349.4 326 59.2
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.3e-94 349.4 349 55.9
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.8e-93 346.3 353 54.7
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 3.7e-93 345.9 353 54.7
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.1e-92 344.4 348 54.0
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.4e-92 344.0 340 57.1
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.4e-92 344.0 347 53.6
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.8e-92 343.6 352 54.3
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 3.1e-92 342.8 346 53.5
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 4.1e-92 342.4 341 53.1
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 5.3e-92 342.0 351 52.7
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 5.3e-92 342.0 357 52.9
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 9.0e-92 341.3 344 52.9
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 9.0e-92 341.3 344 54.1
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.2e-91 340.9 344 54.4
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 4.5e-91 339.0 339 54.0
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 4.5e-91 339.0 330 55.2
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.2e-90 336.7 347 55.9
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 3.8e-90 335.9 326 56.1
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 8.5e-90 334.7 356 55.6
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.1e-89 334.3 358 53.6
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.9e-89 333.6 367 51.8
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.2e-88 330.9 377 50.1
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 1.2e-88 330.9 377 50.1
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 2.7e-88 329.7 352 54.3
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.7e-88 329.7 334 55.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 4.6e-88 328.9 349 54.2
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.0e-87 327.8 376 50.0
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 3.7e-85 319.3 336 55.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 4.1e-84 315.8 324 54.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 5.5e-81 305.4 312 52.9
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.4e-76 290.8 323 52.0
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 2.6e-75 286.6 354 45.2
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.1e-70 271.2 344 46.5
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 2.4e-68 263.5 342 46.5
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 5.9e-67 258.8 167 70.7
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 5.9e-67 258.8 346 44.8
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.2e-66 256.9 169 68.0
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 3.8e-66 256.1 209 60.3
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 3.0e-63 246.5 347 44.7
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 8.8e-63 245.0 301 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 2.0e-62 243.8 341 40.5
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.8e-60 237.3 356 41.3
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 5.9e-59 232.3 320 40.0
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.9e-57 227.3 241 53.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 7.2e-57 225.3 324 44.1
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.6e-56 224.2 336 41.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 8.3e-53 211.8 373 37.0
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 9.1e-52 208.4 317 44.8
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.3e-50 203.8 202 50.5
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 8.0e-48 195.3 128 70.3
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 7.8e-43 178.7 317 42.3
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 2.5e-41 173.7 128 62.5
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 2.8e-40 170.2 363 35.0
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 5.2e-39 166.0 206 49.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 3.7e-37 159.8 315 34.3
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.4e-36 157.9 111 64.9
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 6.8e-31 139.0 180 53.9
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 8.3e-29 132.1 88 69.3
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 4.1e-28 129.8 242 40.9
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.5e-25 120.6 142 57.0
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.2e-24 118.2 143 41.3
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.2e-22 111.7 78 60.3
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 4.1e-20 103.2 76 65.8
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 9.2e-20 102.1 90 60.0
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 8.9e-15 85.5 59 66.1
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.1e-12 78.6 133 42.9
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 4.1e-12 76.6 105 54.3
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.2e-11 75.1 176 31.8
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 9.6e-09 65.5 115 28.7
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.2e-08 65.1 59 54.2


User provided reference genes

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