Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.4e-122 442.2 221 100.0
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.8e-99 365.5 224 80.8
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 4.8e-99 364.8 223 81.2
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 5.3e-98 361.3 221 78.7
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 6.9e-98 360.9 223 80.7
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 9.0e-98 360.5 216 81.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 2.6e-97 359.0 216 81.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 7.6e-97 357.5 216 81.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 5.1e-93 344.7 222 77.9
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.7e-93 344.4 216 77.3
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 2.5e-92 342.4 216 75.5
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 3.3e-92 342.0 220 75.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 7.4e-92 340.9 216 75.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.8e-91 339.0 228 74.6
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 4.8e-91 338.2 216 76.4
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.8e-90 336.3 225 74.2
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.4e-90 335.9 220 74.5
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 3.1e-90 335.5 216 76.9
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.1e-90 335.1 216 76.9
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.1e-90 335.1 216 76.9
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 6.9e-90 334.3 221 75.1
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.5e-89 333.2 216 75.5
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 3.4e-89 332.0 220 74.5
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.9e-89 331.3 219 72.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 5.9e-89 331.3 216 73.1
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.6e-89 330.9 216 73.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 7.6e-89 330.9 217 74.2
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.7e-88 329.7 216 74.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.9e-88 328.9 215 73.0
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.9e-88 328.9 218 72.9
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 5.0e-88 328.2 216 73.6
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 6.5e-88 327.8 216 74.1
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 8.4e-88 327.4 218 72.9
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.1e-87 327.0 214 74.8
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.4e-87 326.6 216 75.5
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.9e-87 326.2 216 75.0
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 2.5e-87 325.9 219 74.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 4.2e-87 325.1 223 72.2
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 4.2e-87 325.1 217 71.9
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 7.2e-87 324.3 217 72.4
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.2e-87 324.3 216 71.3
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.1e-86 322.8 217 75.1
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 3.6e-86 322.0 220 71.4
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 7.9e-86 320.9 217 72.8
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.8e-85 319.7 220 70.5
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 6.7e-85 317.8 220 70.0
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 6.7e-85 317.8 210 73.3
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 6.7e-85 317.8 213 72.3
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.9e-84 316.2 220 69.1
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.9e-84 316.2 214 72.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 7.4e-84 314.3 218 71.6
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.3e-83 313.5 221 69.7
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 3.7e-83 312.0 216 69.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 6.3e-83 311.2 208 72.6
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.8e-82 309.7 214 68.7
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 4.1e-82 308.5 216 69.0
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 4.1e-82 308.5 222 68.9
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 5.3e-82 308.1 218 70.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 2.0e-81 306.2 211 69.7
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.0e-81 306.2 217 68.7
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.0e-81 306.2 217 68.7
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.0e-81 306.2 220 67.7
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 5.9e-81 304.7 221 68.8
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 5.9e-81 304.7 220 67.3
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 7.7e-81 304.3 222 68.0
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-80 303.9 221 68.8
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.0e-80 303.9 220 67.3
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-80 303.5 218 70.2
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 2.2e-80 302.8 217 69.6
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 3.8e-80 302.0 221 67.9
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 5.0e-80 301.6 221 68.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 5.0e-80 301.6 221 68.3
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 5.0e-80 301.6 216 68.5
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 6.5e-80 301.2 224 66.5
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 8.5e-80 300.8 225 66.7
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 2.5e-79 299.3 220 66.4
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.5e-79 299.3 215 68.8
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.2e-79 298.5 273 56.8
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.2e-79 298.5 219 68.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 5.5e-79 298.1 219 67.6
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 7.2e-79 297.7 217 69.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.2e-78 297.0 223 64.1
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-78 297.0 218 67.0
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 67.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.7e-78 295.8 195 75.9
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.0e-77 293.9 220 65.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.4e-77 293.5 212 68.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.8e-77 293.1 223 64.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 3.0e-77 292.4 219 65.8
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 5.1e-77 291.6 218 64.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 6.7e-77 291.2 222 66.7
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.2e-73 280.4 214 64.5
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.5e-73 280.0 208 65.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 1.0e-72 277.3 216 63.0
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 3.8e-72 275.4 213 64.8
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.8e-72 275.4 207 63.8
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 6.5e-72 274.6 205 63.9
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 4.2e-71 271.9 200 67.0
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.6e-70 270.0 179 71.5
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 6.1e-70 268.1 212 59.4
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-69 267.3 199 66.8
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.3e-69 266.2 222 63.1
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 3.9e-69 265.4 200 68.5
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.9e-69 265.4 216 58.3
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.9e-69 265.4 208 59.6
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 6.7e-69 264.6 217 63.6
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.1e-68 263.8 171 75.4
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.1e-68 263.8 207 63.3
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.0e-68 263.1 184 71.7
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.0e-68 263.1 164 79.3
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.3e-68 262.3 203 61.6
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.3e-68 262.3 203 61.6
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.2e-67 259.6 207 59.9
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-66 257.3 217 62.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.1e-66 257.3 170 74.7
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.6e-65 252.7 150 83.3
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 7.7e-65 251.1 221 61.1
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.0e-64 250.8 211 55.5
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.5e-63 246.1 150 79.3
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.5e-63 245.0 204 55.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 2.7e-62 242.7 160 73.1
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.0e-61 239.2 207 60.9
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.7e-59 233.4 156 75.0
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 6.3e-59 231.5 209 52.6
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.0e-58 228.0 216 56.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.2e-57 227.3 224 51.8
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.9e-55 219.9 220 50.9
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 5.5e-55 218.4 173 60.1
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 9.4e-55 217.6 214 51.9
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 6.1e-54 214.9 221 53.8
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.5e-52 210.3 202 51.0
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.0e-52 209.9 205 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 5.4e-50 201.8 204 48.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-48 195.7 221 50.7
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 8.8e-45 184.5 152 53.3
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 9.8e-44 181.0 220 44.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.5e-41 172.2 205 45.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.9e-41 171.8 208 47.1
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.0e-40 171.0 157 55.4
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.3e-40 170.6 214 41.6
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 3.8e-40 169.1 325 34.2
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 7.3e-39 164.9 104 80.8
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 4.7e-38 162.2 101 77.2
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.2e-37 158.7 126 64.3
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 5.2e-37 158.7 209 39.7
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-35 154.1 208 41.8
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 9.2e-34 147.9 89 76.4
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 4.6e-33 145.6 203 40.4
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 9.8e-28 127.9 175 45.7
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 6.0e-25 118.6 127 44.1
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 6.0e-25 118.6 181 40.9
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.3e-24 117.5 82 68.3
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.9e-23 113.6 83 65.1
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 5.4e-18 95.5 198 38.9
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 8.1e-14 81.6 92 48.9
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.8e-13 78.6 65 63.1
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.9e-10 70.5 46 71.7
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 1.0e-08 64.7 43 72.1
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.6e-06 57.4 43 67.4


User provided reference genes

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