Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 0.0e+00 1260.0 663 100.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 4.4e-273 944.5 645 76.6
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 3.7e-264 914.8 661 73.8
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.1e-260 903.3 655 71.1
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 5.4e-255 884.4 665 70.1
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.7e-254 882.1 664 69.1
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.3e-253 879.0 664 68.8
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.2e-248 862.4 644 71.4
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 3.2e-247 858.6 652 68.4
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.5e-244 849.7 667 67.8
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 4.3e-244 848.2 657 67.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.6e-244 847.8 658 67.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.7e-243 844.7 665 66.8
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.4e-242 843.2 667 68.1
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.8e-242 842.8 641 68.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 9.8e-241 837.0 655 67.5
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.6e-238 829.7 654 67.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 4.6e-238 828.2 657 66.2
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.1e-236 823.5 653 68.3
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 4.3e-236 821.6 677 64.3
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.2e-235 820.1 667 66.0
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.2e-233 813.5 674 64.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 3.4e-233 812.0 666 66.8
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 3.8e-232 808.5 646 64.7
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.1e-231 807.0 668 64.1
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.9e-231 806.2 670 66.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 5.4e-231 804.7 637 65.8
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.7e-229 799.7 673 63.9
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.0e-229 798.9 624 67.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.9e-229 798.5 664 63.0
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 1.5e-228 796.6 666 62.6
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 9.6e-228 793.9 669 65.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.2e-227 793.5 652 64.6
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.8e-226 789.6 649 63.0
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.4e-226 789.3 664 63.7
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 4.0e-226 788.5 649 65.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 3.4e-225 785.4 652 65.0
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 5.8e-225 784.6 654 64.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 9.9e-225 783.9 650 62.9
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.3e-224 783.5 668 62.3
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 4.9e-224 781.6 650 65.1
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.4e-223 780.0 654 63.8
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.9e-223 779.6 648 63.9
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 4.2e-223 778.5 646 63.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 5.4e-223 778.1 655 61.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.2e-222 776.9 652 66.0
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 4.6e-222 775.0 663 62.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 6.0e-222 774.6 656 62.2
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.3e-221 772.7 662 63.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.0e-221 772.3 648 64.7
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 3.9e-221 771.9 655 64.0
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 9.6e-220 767.3 652 63.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 2.1e-219 766.1 652 65.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.1e-219 766.1 652 62.4
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 4.5e-217 758.4 652 62.4
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 4.5e-217 758.4 652 62.4
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 6.4e-216 754.6 655 61.5
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.6e-214 750.0 656 59.8
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.7e-214 749.2 655 62.0
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.0e-213 747.3 663 58.7
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.0e-213 747.3 666 62.6
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.0e-213 747.3 659 60.2
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.3e-213 746.9 654 59.6
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.7e-213 744.6 670 62.8
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.5e-212 743.4 664 60.2
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 3.3e-212 742.3 662 60.6
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 3.3e-212 742.3 660 62.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 7.4e-212 741.1 642 60.7
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.3e-211 740.3 668 62.1
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.6e-211 740.0 666 62.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.1e-211 739.6 677 59.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 3.6e-211 738.8 667 59.4
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 4.8e-211 738.4 651 60.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 8.1e-211 737.6 661 59.3
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 9.9e-209 730.7 687 57.8
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 9.3e-207 724.2 647 60.1
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.2e-206 723.8 697 57.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 8.2e-203 711.1 616 63.5
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 6.9e-202 708.0 648 59.7
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 7.4e-196 688.0 494 70.6
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.6e-196 687.6 590 61.4
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.8e-194 683.3 567 63.8
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.8e-192 675.6 536 63.2
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.0e-189 666.0 530 65.5
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 9.7e-188 661.0 657 56.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.4e-186 656.4 674 54.5
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.1e-182 643.3 496 66.9
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 9.1e-178 627.9 657 55.9
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.0e-177 626.7 686 51.5
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.1e-170 602.8 502 60.8
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.2e-168 596.7 660 51.8
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 4.2e-167 592.4 698 49.6
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.3e-165 586.6 533 60.2
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.4e-162 576.6 483 62.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 5.0e-160 568.9 643 47.9
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.9e-159 567.0 603 53.1
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.1e-154 549.3 542 54.4
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.2e-131 473.8 447 59.3
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.9e-131 472.6 646 42.0
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.1e-126 457.2 524 50.2
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 9.5e-119 431.8 750 37.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.7e-115 421.0 680 40.4
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 6.4e-107 392.5 284 66.9
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 4.0e-101 373.2 291 69.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.6e-100 370.5 383 56.9
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 7.1e-98 362.5 335 60.0
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.0e-96 358.6 578 38.6
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 7.6e-92 342.4 333 57.1
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 5.5e-90 336.3 292 63.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.6e-89 334.7 647 36.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.5e-79 301.6 428 47.7
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 3.3e-79 300.4 291 58.8
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.8e-78 297.4 488 38.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.7e-73 280.8 318 48.7
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.1e-64 250.0 175 70.3
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.7e-62 245.0 207 63.8
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 7.0e-61 239.6 379 41.2
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.7e-57 227.6 384 41.4
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.7e-57 226.9 149 76.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.7e-54 218.4 200 56.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-50 204.9 157 64.3
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 5.0e-43 180.3 117 71.8
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.0e-36 158.3 350 31.7
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 2.5e-34 151.4 179 57.0
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 3.4e-31 141.0 689 26.3
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 6.4e-22 110.2 101 59.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.5e-15 89.0 91 51.6
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.6e-15 88.2 61 77.0
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 3.7e-14 84.3 94 48.9
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.9e-14 84.0 91 48.4
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 5.4e-13 80.5 166 33.7
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.1e-12 78.6 55 67.3
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 6.0e-12 77.0 55 65.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.8e-12 76.6 63 57.1
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.7e-11 75.5 91 47.3
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.7e-11 75.5 63 57.1
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.7e-06 58.9 102 36.3
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 6.4e-06 57.0 56 46.4


User provided reference genes

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