Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 0.0e+00 1125.2 580 100.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.2e-212 742.7 605 66.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.4e-206 722.6 595 65.7
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 9.9e-205 717.2 609 63.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 8.4e-204 714.1 614 65.1
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.9e-203 713.0 602 64.6
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 4.2e-203 711.8 617 64.2
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.2e-202 710.3 602 64.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.6e-202 709.9 602 64.3
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 5.1e-201 704.9 608 63.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.9e-200 703.0 607 63.3
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.4e-198 696.8 606 63.0
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.4e-198 696.0 599 65.4
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.5e-194 682.2 615 62.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.0e-194 681.4 607 64.3
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 6.7e-193 677.9 622 61.3
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.5e-192 676.8 631 60.9
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.8e-191 672.5 610 62.5
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 5.3e-190 668.3 619 61.1
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.5e-181 640.2 616 59.6
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.4e-181 639.0 605 58.5
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-180 636.7 568 63.7
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 3.8e-180 635.6 608 59.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.5e-180 634.8 608 59.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 6.5e-180 634.8 585 60.7
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.4e-179 633.6 600 58.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 9.4e-179 630.9 605 59.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.6e-178 630.2 613 59.1
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.1e-178 629.8 679 53.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.7e-178 629.4 610 59.5
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.7e-178 628.6 616 58.4
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.0e-176 623.2 619 58.2
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.0e-176 623.2 630 56.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.3e-175 620.5 605 56.4
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 6.3e-175 618.2 600 57.0
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.0e-173 613.2 623 57.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 7.7e-173 611.3 605 57.7
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-171 606.7 701 49.8
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.2e-171 605.5 604 56.0
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.1e-170 603.2 630 56.2
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.0e-169 600.9 701 49.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 4.8e-167 592.0 623 56.0
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 5.3e-166 588.6 586 58.0
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.5e-163 580.5 601 53.4
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.5e-163 579.7 560 60.5
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.5e-163 579.7 618 56.1
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.2e-163 578.2 618 55.5
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.2e-162 577.4 616 53.6
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.6e-162 575.9 506 64.0
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 8.0e-162 574.7 619 55.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.0e-161 574.3 601 54.9
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.0e-161 572.8 609 55.0
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 4.0e-161 572.4 619 55.1
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 5.2e-161 572.0 624 55.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.7e-160 567.8 580 57.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.2e-159 566.6 620 53.9
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.3e-159 565.1 612 54.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 3.1e-158 562.8 649 51.9
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.6e-157 560.5 611 53.8
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.5e-157 559.3 622 53.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 3.5e-157 559.3 610 54.3
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.0e-156 557.8 610 53.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.2e-154 550.8 611 53.2
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.6e-154 550.4 617 53.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.0e-153 545.8 471 63.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.0e-152 543.5 621 53.0
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 2.6e-152 543.1 672 48.5
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 2.6e-152 543.1 672 48.5
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 4.4e-152 542.3 614 52.1
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.4e-150 536.6 618 54.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.1e-150 536.2 602 52.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 3.1e-150 536.2 580 55.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 7.0e-150 535.0 607 52.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.7e-148 530.4 613 52.4
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.7e-148 530.4 624 52.6
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.5e-147 526.6 599 49.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 5.5e-147 525.4 641 51.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.8e-146 523.1 619 51.2
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.3e-145 520.0 601 52.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 9.8e-144 514.6 612 51.5
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 9.8e-144 514.6 612 51.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.4e-142 510.0 623 50.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 4.5e-141 505.8 627 50.7
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.9e-140 503.1 605 48.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.8e-137 493.8 622 49.5
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 6.8e-137 491.9 599 50.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.0e-136 490.3 622 49.2
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.9e-135 485.7 642 47.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.4e-134 484.2 602 49.7
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 5.4e-134 482.3 622 49.5
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.6e-133 480.7 561 51.3
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 7.8e-133 478.4 613 48.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 9.5e-131 471.5 612 48.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.7e-125 453.4 608 48.4
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.5e-123 446.8 597 48.9
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.2e-114 417.9 553 47.7
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 8.9e-113 411.8 411 59.1
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.8e-111 406.4 644 44.7
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.6e-109 401.0 602 45.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.3e-106 391.3 450 50.4
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 2.1e-101 374.0 399 51.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.3e-84 318.2 352 52.3
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.8e-81 307.8 286 58.4
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 6.5e-79 299.3 233 70.8
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.2e-78 296.6 538 40.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 2.3e-76 290.8 699 33.3
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 4.8e-66 256.5 492 39.4
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-54 218.8 268 49.3
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-46 192.2 182 56.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 6.1e-45 186.4 546 31.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.7e-42 178.3 141 67.4
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.2e-42 177.9 276 47.8
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.1e-41 174.1 473 32.8
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.1e-41 172.6 276 38.8
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 6.1e-37 159.8 149 61.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.0e-36 157.5 113 69.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.7e-34 150.6 129 62.0
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.9e-34 150.2 138 60.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-33 148.7 166 53.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.9e-31 141.0 101 69.3
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 9.5e-30 136.0 571 27.1
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 8.0e-29 132.9 188 46.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.8e-28 131.7 628 26.6
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.4e-25 122.1 184 46.2
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.1e-25 120.6 194 40.7
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.8e-24 116.3 81 69.1
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 8.6e-23 112.8 580 23.4
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.6e-21 107.5 161 47.2
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.8e-20 105.1 81 60.5
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 6.8e-20 103.2 129 50.4
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.3e-18 99.0 95 64.2
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-16 91.7 78 62.8
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 3.3e-14 84.3 70 67.1
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 8.1e-13 79.7 148 40.5
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 6.4e-10 70.1 67 50.7
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.7e-07 62.0 85 37.6
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.9e-07 60.8 49 51.0


User provided reference genes

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