Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 4.8e-102 374.4 176 100.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.4e-45 186.8 194 49.5
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 2.3e-43 179.5 197 45.2
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 3.0e-43 179.1 196 47.4
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.5e-42 176.8 198 43.9
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.9e-42 176.4 196 46.9
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 7.3e-42 174.5 196 44.4
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.6e-41 173.3 197 44.7
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 2.1e-41 172.9 198 47.0
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 2.1e-41 172.9 198 47.0
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.7e-41 171.8 194 45.9
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 6.2e-41 171.4 196 43.9
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 8.1e-41 171.0 191 44.0
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 8.1e-41 171.0 193 44.6
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.4e-40 170.2 191 42.9
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.8e-40 169.9 193 43.5
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-40 169.9 198 42.9
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-40 169.9 193 42.5
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.8e-40 169.9 193 43.5
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.3e-40 169.5 193 44.6
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.3e-40 169.5 192 43.8
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 3.1e-40 169.1 196 42.9
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.1e-40 169.1 198 42.9
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.0e-40 168.7 196 42.3
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 4.0e-40 168.7 192 45.3
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 5.2e-40 168.3 199 42.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.2e-40 168.3 195 43.6
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 5.2e-40 168.3 201 40.8
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.8e-40 167.9 196 42.3
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 6.8e-40 167.9 200 45.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 6.8e-40 167.9 194 42.8
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 8.9e-40 167.5 195 43.1
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 8.9e-40 167.5 196 43.4
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.2e-39 167.2 188 44.7
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.2e-39 167.2 192 43.2
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.2e-39 167.2 192 43.2
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.5e-39 166.8 196 41.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.6e-39 166.0 196 43.4
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.6e-39 166.0 198 43.9
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.6e-39 166.0 194 42.8
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-39 166.0 193 43.5
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.4e-39 165.6 189 42.3
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 3.4e-39 165.6 195 42.1
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 3.4e-39 165.6 198 42.4
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 4.4e-39 165.2 189 40.2
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 7.5e-39 164.5 195 43.6
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 7.5e-39 164.5 205 42.9
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.5e-39 164.5 196 40.8
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.3e-38 163.7 194 44.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.3e-38 163.7 193 44.0
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.3e-38 163.7 194 41.2
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.7e-38 163.3 192 41.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.7e-38 163.3 202 40.1
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.2e-38 162.9 196 42.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.2e-38 162.9 208 38.5
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 2.9e-38 162.5 199 41.2
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.7e-38 162.2 193 42.0
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 4.9e-38 161.8 190 45.3
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 4.9e-38 161.8 203 40.4
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.9e-38 161.8 193 44.6
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 6.4e-38 161.4 199 42.2
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.1e-37 160.6 197 42.1
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.1e-37 160.6 189 41.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.4e-37 159.5 189 43.4
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 3.2e-37 159.1 193 41.5
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.1e-37 158.7 202 39.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 4.1e-37 158.7 194 40.7
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.1e-37 158.7 193 42.0
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.1e-37 158.7 193 42.0
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.1e-37 158.7 194 42.8
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 5.4e-37 158.3 188 41.5
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 7.1e-37 157.9 198 40.4
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 7.1e-37 157.9 193 42.5
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 7.1e-37 157.9 194 40.7
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 7.1e-37 157.9 196 41.8
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.1e-37 157.9 188 41.5
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.6e-36 156.8 184 41.8
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.1e-36 156.4 195 41.0
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.1e-36 156.4 190 37.9
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 4.6e-36 155.2 214 38.3
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-35 154.1 196 40.8
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.7e-35 153.3 177 45.2
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 1.7e-35 153.3 198 40.9
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 3.0e-35 152.5 187 41.2
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 3.9e-35 152.1 194 40.2
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 6.6e-35 151.4 146 48.6
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 6.6e-35 151.4 194 39.2
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 8.6e-35 151.0 188 42.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 8.6e-35 151.0 179 42.5
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.1e-34 150.6 184 42.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.1e-34 150.6 188 42.0
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.9e-34 149.8 188 42.0
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.9e-34 149.8 108 60.2
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 2.5e-34 149.4 180 41.1
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.3e-34 149.1 186 41.9
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.3e-34 149.1 193 39.9
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 4.3e-34 148.7 139 47.5
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 4.3e-34 148.7 195 37.9
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 4.3e-34 148.7 196 39.8
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 5.6e-34 148.3 197 40.6
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 9.5e-34 147.5 196 39.3
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 9.5e-34 147.5 196 39.3
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 9.5e-34 147.5 194 40.2
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.2e-33 147.1 197 38.6
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.6e-33 145.6 178 40.4
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 4.7e-33 145.2 196 39.8
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 4.7e-33 145.2 194 36.6
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.2e-33 144.8 106 53.8
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.1e-32 144.1 178 41.0
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.4e-32 143.7 190 37.9
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.4e-32 143.7 190 37.9
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 3.1e-32 142.5 183 41.0
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 4.0e-32 142.1 192 39.1
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 8.9e-32 141.0 180 38.3
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 8.9e-32 141.0 180 38.3
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.5e-31 140.2 180 38.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 9.9e-31 137.5 109 55.0
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.4e-30 134.8 168 40.5
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.1e-29 134.0 210 37.1
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.9e-29 133.3 99 55.6
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.4e-29 132.9 190 36.3
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 3.2e-29 132.5 180 40.6
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 4.1e-29 132.1 266 31.2
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 9.2e-29 131.0 203 36.9
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.0e-27 127.5 195 34.4
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 5.1e-27 125.2 203 36.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.1e-26 124.0 201 33.8
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.1e-26 124.0 270 30.7
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 4.3e-26 122.1 208 34.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.6e-26 121.7 182 35.2
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 4.0e-24 115.5 180 34.4
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 5.2e-24 115.2 102 45.1
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.0e-23 113.2 196 36.7
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.6e-23 112.8 151 39.1
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 3.4e-23 112.5 156 36.5
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.4e-23 112.1 189 35.4
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 9.9e-23 110.9 170 36.5
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 2.9e-22 109.4 170 35.9
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 2.9e-22 109.4 170 35.9
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 6.4e-22 108.2 192 32.3
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.4e-21 107.1 151 37.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.2e-21 105.9 152 39.5
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.6e-20 102.1 150 36.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.7e-19 100.1 167 35.3
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.0e-19 99.4 171 36.3
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.5e-18 97.1 138 39.9
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.8e-16 90.1 116 36.2
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.2e-15 87.4 133 36.8
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.2e-14 83.2 186 27.4
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 7.1e-13 78.2 127 37.0
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 4.6e-12 75.5 132 34.8
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.8e-11 73.6 82 47.6
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.3e-11 73.2 51 58.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 3.0e-11 72.8 187 28.3
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.4e-08 63.9 45 57.8
QL08p031358 Quercus lobata HOM05D006348 ORTHO05D008261 2.4e-08 63.2 147 26.5
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 4.0e-08 62.4 142 27.5
Medtr5g086350 Medicago truncatula HOM05D006348 ORTHO05D008261 5.3e-08 62.0 142 26.8
TPR.G31828 Trifolium pratense HOM05D006348 ORTHO05D008261 6.9e-08 61.6 142 26.8
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 9.0e-08 61.2 47 51.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.3e-06 57.4 130 29.2
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.7e-06 57.0 105 28.6


User provided reference genes

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