Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 8.2e-39 163.3 86 100.0
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.5e-37 159.1 86 96.5
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.5e-37 159.1 86 96.5
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 3.5e-37 157.9 86 95.3
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 5.9e-37 157.1 86 94.2
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 5.9e-37 157.1 86 94.2
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 7.7e-37 156.8 84 96.4
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 1.0e-36 156.4 86 95.3
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 2.2e-36 155.2 82 97.6
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 2.2e-36 155.2 85 92.9
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 2.9e-36 154.8 84 94.0
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 3.8e-36 154.5 86 91.9
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 3.8e-36 154.5 86 91.9
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 5.0e-36 154.1 86 91.9
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 6.5e-36 153.7 86 91.9
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 6.5e-36 153.7 86 91.9
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 6.5e-36 153.7 86 93.0
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 6.5e-36 153.7 86 91.9
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 8.5e-36 153.3 82 96.3
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.4e-35 152.5 86 90.7
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 1.4e-35 152.5 86 91.9
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 1.4e-35 152.5 86 89.5
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 90.7
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 91.7
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 91.7
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 91.7
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 91.7
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 1.9e-35 152.1 84 91.7
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.9e-35 152.1 86 90.7
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 2.5e-35 151.8 86 90.7
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 90.7
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 90.7
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 90.7
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 90.7
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 91.9
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 3.2e-35 151.4 86 90.7
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 3.2e-35 151.4 84 91.7
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 3.2e-35 151.4 82 93.9
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 4.2e-35 151.0 86 90.7
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 5.5e-35 150.6 84 91.7
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 5.5e-35 150.6 84 91.7
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 5.5e-35 150.6 86 89.5
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 7.2e-35 150.2 86 89.5
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 7.2e-35 150.2 86 89.5
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 7.2e-35 150.2 86 89.5
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 7.2e-35 150.2 84 90.5
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 7.2e-35 150.2 84 90.5
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 9.4e-35 149.8 86 89.5
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 9.4e-35 149.8 84 90.5
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 1.2e-34 149.4 86 89.5
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 1.2e-34 149.4 86 89.5
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.6e-34 149.1 86 88.4
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 2.7e-34 148.3 86 89.5
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 3.6e-34 147.9 84 89.3
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 4.7e-34 147.5 86 88.4
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 8.0e-34 146.7 87 89.7
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 8.0e-34 146.7 87 89.7
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 8.0e-34 146.7 87 89.7
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 8.0e-34 146.7 87 89.7
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 8.0e-34 146.7 87 89.7
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 1.0e-33 146.4 88 87.5
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 1.8e-33 145.6 82 87.8
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 1.8e-33 145.6 78 94.9
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 2.3e-33 145.2 86 88.4
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 5.2e-33 144.1 82 86.6
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 2.6e-32 141.7 84 83.3
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 5.7e-32 140.6 86 84.9
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 5.7e-32 140.6 86 84.9
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 4.8e-31 137.5 86 81.4
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 1.1e-30 136.3 84 82.1
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 4.1e-30 134.4 92 76.1
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.6e-29 132.5 72 93.1
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 2.0e-29 132.1 86 77.9
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 2.6e-29 131.7 72 93.1
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 5.9e-29 130.6 78 85.9
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 1.3e-28 129.4 73 90.4
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 8.5e-28 126.7 85 81.2
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 8.5e-28 126.7 85 81.2
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 1.9e-27 125.6 83 81.9
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 3.2e-27 124.8 73 89.0
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 7.2e-27 123.6 84 76.2
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 2.1e-26 122.1 86 74.4
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 2.1e-26 122.1 86 74.4
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 2.1e-26 122.1 86 74.4
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 2.7e-26 121.7 73 80.8
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 4.7e-26 120.9 93 72.0
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 4.7e-26 120.9 84 75.0
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 1.0e-25 119.8 75 78.7
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.8e-25 119.0 86 73.3
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 3.0e-25 118.2 86 74.4
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 8.8e-25 116.7 86 70.9
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 3.8e-20 101.3 71 71.8
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 1.1e-19 99.8 76 63.2
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 1.1e-19 99.8 72 69.4
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 4.7e-18 94.4 86 64.0
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 1.2e-16 89.7 64 75.0
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 2.0e-16 89.0 69 60.9
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 2.2e-15 85.5 44 93.2
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 6.3e-15 84.0 49 85.7
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 2.7e-13 78.6 46 80.4
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 3.5e-13 78.2 70 61.4
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 1.2e-08 63.2 56 48.2
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 6.3e-07 57.4 33 81.8


User provided reference genes

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