Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.4e-190 669.1 392 100.0
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.1e-129 465.7 395 71.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.2e-102 376.3 355 63.1
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 8.6e-95 351.7 358 57.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.3e-94 349.7 359 61.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.5e-91 340.9 364 55.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.5e-88 329.3 367 54.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.5e-86 323.6 351 56.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.4e-84 317.8 400 56.8
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 3.1e-84 316.6 360 56.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.0e-83 313.9 367 52.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.4e-83 313.2 411 51.8
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 6.4e-82 308.9 342 52.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 8.3e-82 308.5 360 55.0
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.2e-81 306.6 350 55.1
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.4e-81 305.8 395 53.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.4e-81 305.8 395 53.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.5e-78 297.7 395 50.6
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-78 297.4 419 47.7
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.8e-76 288.9 355 51.0
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 7.5e-75 285.4 362 50.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.4e-73 280.4 367 48.8
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.6e-72 277.7 384 47.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-71 274.6 367 49.6
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.0e-71 273.5 400 46.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.5e-70 271.2 363 48.5
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.3e-70 269.6 363 50.1
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.0e-68 263.1 299 57.9
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-66 257.7 432 44.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.9e-66 256.9 424 47.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.7e-66 256.5 365 46.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.9e-65 254.2 459 45.8
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.4e-65 253.8 358 48.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 7.1e-65 252.3 370 47.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.5e-64 250.0 467 46.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.0e-64 249.2 362 47.5
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.9e-63 246.5 372 47.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.9e-62 244.2 375 46.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.9e-62 244.2 366 45.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.5e-62 243.8 468 43.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 5.6e-62 242.7 474 40.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 9.5e-62 241.9 399 48.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.6e-61 241.1 383 44.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.6e-61 241.1 445 42.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.6e-61 240.0 403 44.2
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-60 238.4 475 39.8
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.1e-60 238.4 367 48.0
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 5.2e-60 236.1 412 47.1
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.4e-59 233.4 363 45.5
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.4e-59 233.4 363 45.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-59 233.0 382 45.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-59 233.0 382 45.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.7e-58 231.1 365 42.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.2e-58 230.7 363 45.5
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 3.8e-58 229.9 390 44.9
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 8.4e-58 228.8 349 44.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 8.4e-58 228.8 358 46.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.0e-55 221.9 425 43.3
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.3e-55 221.5 323 52.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-55 220.7 334 46.4
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.1e-55 219.5 445 39.8
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-54 218.4 338 45.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.5e-54 217.2 399 41.1
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.3e-54 216.5 425 39.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 5.6e-54 216.1 427 39.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 7.3e-54 215.7 282 50.4
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 4.8e-53 213.0 359 47.4
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.8e-53 213.0 333 45.6
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 8.1e-53 212.2 416 42.3
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.0e-52 209.9 440 38.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.0e-52 208.8 289 48.8
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 9.0e-52 208.8 276 49.6
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.5e-51 208.0 428 39.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-51 206.5 359 46.5
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.4e-51 206.5 284 47.2
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.4e-51 206.5 431 38.1
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.8e-51 206.1 287 47.4
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.9e-51 205.3 378 44.2
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-50 204.9 380 44.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 8.4e-50 202.2 405 39.3
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.1e-49 201.8 378 43.9
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.4e-49 200.7 285 48.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.1e-49 199.1 374 41.7
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 9.3e-49 198.7 458 36.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 2.1e-48 197.6 495 40.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 3.5e-48 196.8 358 42.7
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 4.6e-48 196.4 390 41.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.6e-48 196.4 500 34.8
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.7e-47 194.5 527 34.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-47 194.5 231 54.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.5e-46 191.4 444 38.7
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.3e-46 190.3 339 41.6
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.3e-46 190.3 417 37.4
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 4.3e-46 189.9 278 50.4
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.3e-46 189.1 231 52.8
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.1e-45 187.6 417 38.4
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.1e-44 183.7 346 43.1
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 5.3e-44 183.0 422 39.8
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.2e-43 181.8 390 36.9
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.6e-43 179.1 392 38.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.3e-42 178.3 369 39.8
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.7e-40 170.6 348 39.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.7e-40 170.6 464 33.8
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-39 167.9 330 41.2
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.3e-39 167.5 353 38.5
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.5e-38 164.9 233 48.5
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.9e-38 164.5 343 38.8
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 7.4e-38 162.5 452 33.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.6e-37 161.4 167 55.1
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.7e-37 160.2 490 31.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.7e-37 160.2 453 33.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.1e-36 157.1 454 33.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 5.3e-36 156.4 453 33.6
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.9e-36 156.0 472 32.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.2e-35 155.2 194 49.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.5e-35 154.8 472 32.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.8e-34 150.2 458 33.6
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.8e-34 150.2 458 33.6
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 3.8e-34 150.2 367 35.1
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.9e-34 149.8 372 35.2
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.4e-34 149.4 383 33.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-33 148.3 452 32.7
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-33 147.5 471 33.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.6e-32 144.8 342 37.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.1e-32 144.4 445 35.5
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.8e-31 141.4 407 33.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.1e-29 134.4 355 36.6
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.1e-29 134.4 389 35.0
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.8e-29 134.0 462 32.5
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.8e-29 133.3 154 54.5
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.8e-28 131.3 281 40.6
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.1e-28 130.6 150 54.0
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 5.3e-28 129.8 368 35.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.0e-26 125.6 190 42.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.5e-25 120.9 281 38.8
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 7.1e-25 119.4 186 47.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.6e-24 118.2 367 35.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.7e-24 117.5 398 32.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.5e-24 117.1 375 32.3
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 4.6e-24 116.7 297 34.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.3e-23 115.2 372 35.2
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.8e-21 106.7 275 33.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.8e-21 106.7 217 40.1
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 8.2e-21 105.9 160 41.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.4e-20 105.1 293 33.1
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.4e-20 104.4 215 40.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.2e-19 102.1 249 35.3
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.5e-19 101.7 261 37.5
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.7e-18 98.2 354 32.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 5.0e-18 96.7 100 59.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.2e-17 94.0 233 36.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-16 92.0 162 41.4
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.1e-16 91.3 218 34.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.6e-16 90.5 281 32.7
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 4.6e-16 90.1 139 46.0
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.0e-15 87.4 269 32.7
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 3.0e-15 87.4 179 39.7
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.7e-15 86.3 359 28.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.8e-15 85.9 289 33.9
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.4e-12 77.8 438 28.8
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.6e-11 74.3 354 31.6
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.7e-11 72.8 159 37.7
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.0e-10 72.4 159 35.2
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.7e-10 71.6 261 33.3
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.9e-10 70.9 215 33.5
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-09 68.9 78 53.8
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.1e-09 68.9 215 33.0
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.5e-09 66.6 121 41.3
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.6e-08 65.1 422 26.8
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 4.7e-08 63.5 158 36.1
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 7.9e-08 62.8 145 37.2
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.0e-07 62.4 155 34.2
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.9e-07 60.5 229 27.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.6e-06 57.8 320 26.2
Pp3c20_3960 Physcomitrium patens HOM05D025130 ORTHO05D030134 9.7e-06 55.8 201 30.8
Pp3c20_4020 Physcomitrium patens HOM05D025130 ORTHO05D030134 9.7e-06 55.8 201 30.8


User provided reference genes

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