Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.2e-54 215.3 103 100.0
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.0e-43 178.3 103 85.4
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.2e-41 172.9 102 81.4
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.4e-39 164.9 102 78.4
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.8e-39 164.1 102 76.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.5e-39 163.7 103 76.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 9.8e-39 163.3 100 78.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-38 162.9 103 79.6
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.7e-38 162.5 102 76.5
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.7e-38 162.5 102 76.5
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.9e-38 161.0 102 76.5
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.4e-38 160.6 100 80.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.4e-38 160.6 100 80.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 8.3e-38 160.2 102 76.5
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-37 159.8 103 73.8
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.1e-37 159.8 102 76.5
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.4e-37 159.5 96 81.2
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 7.0e-37 157.1 100 77.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 9.2e-37 156.8 103 74.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 4.6e-36 154.5 99 77.8
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-35 152.9 103 73.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 3.0e-35 151.8 104 75.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 3.0e-35 151.8 102 74.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.9e-35 151.4 102 71.6
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.1e-35 151.0 100 76.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.1e-34 149.8 100 74.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 73.8
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.9e-34 149.1 102 69.6
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 74.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 71.8
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 3.3e-34 148.3 106 72.6
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 4.3e-34 147.9 101 75.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 5.6e-34 147.5 103 70.9
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 5.6e-34 147.5 103 72.8
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.6e-34 147.5 102 69.6
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.6e-34 147.5 102 74.5
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 7.3e-34 147.1 100 74.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 9.5e-34 146.7 100 75.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.2e-33 146.4 100 75.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.2e-33 146.4 100 75.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.1e-33 145.6 103 70.9
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.1e-33 145.6 100 75.0
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.8e-33 145.2 100 73.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.8e-33 145.2 97 73.2
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.6e-33 144.8 103 69.9
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.6e-33 144.8 103 70.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.6e-33 144.8 102 69.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.7e-33 144.4 100 74.0
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.7e-33 144.4 100 74.0
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 6.2e-33 144.1 103 70.9
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 8.1e-33 143.7 91 74.7
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 8.1e-33 143.7 100 71.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-32 143.3 103 68.9
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.8e-32 142.5 103 69.9
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.8e-32 142.5 105 70.5
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.8e-32 142.5 102 70.6
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.3e-32 142.1 97 72.2
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.1e-32 141.7 100 74.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 5.2e-32 141.0 100 73.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 6.8e-32 140.6 103 70.9
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.8e-32 140.6 98 71.4
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.2e-31 139.8 97 71.1
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-31 139.8 100 70.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.5e-31 139.4 105 69.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.5e-31 139.4 106 69.8
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.6e-31 138.7 102 70.6
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 4.4e-31 137.9 102 69.6
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.4e-31 137.9 102 66.7
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.4e-31 137.9 102 66.7
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 4.4e-31 137.9 92 75.0
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 7.5e-31 137.1 104 65.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 9.9e-31 136.7 103 69.9
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.3e-30 136.3 96 67.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.3e-30 136.3 102 70.6
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.3e-30 136.3 103 68.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 2.2e-30 135.6 100 70.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.2e-30 135.6 102 66.7
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 2.9e-30 135.2 106 69.8
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.9e-30 135.2 91 73.6
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.9e-30 135.2 102 69.6
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.7e-30 134.8 102 66.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 3.7e-30 134.8 102 70.6
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 6.4e-30 134.0 100 69.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.1e-29 133.3 100 69.0
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.1e-29 133.3 106 68.9
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.4e-29 132.9 102 64.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.4e-29 132.9 101 68.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.4e-29 132.9 101 68.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.4e-29 132.9 102 64.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.9e-29 132.5 100 68.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.2e-29 131.7 100 68.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.2e-29 131.7 102 66.7
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.2e-29 131.7 102 65.7
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.1e-29 131.3 102 68.6
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.1e-29 131.3 94 73.4
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 7.1e-29 130.6 102 64.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 7.1e-29 130.6 100 67.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 9.2e-29 130.2 100 67.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 9.2e-29 130.2 89 71.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.2e-29 130.2 92 70.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 9.2e-29 130.2 105 67.6
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.2e-28 129.8 96 66.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 2.1e-28 129.0 100 69.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 2.1e-28 129.0 100 69.0
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.7e-28 128.6 102 67.6
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 4.6e-28 127.9 94 71.3
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 6.0e-28 127.5 101 67.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 5.1e-27 124.4 108 59.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.5e-26 122.9 100 62.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.5e-26 122.1 74 74.3
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 92 68.5
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 93 67.7
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 2.5e-26 122.1 92 68.5
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.3e-26 121.7 127 53.5
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 5.6e-26 120.9 100 61.0
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 5.6e-26 120.9 103 65.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 7.3e-26 120.6 104 63.5
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 7.3e-26 120.6 104 64.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 7.3e-26 120.6 104 64.4
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.2e-25 119.8 100 65.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.1e-25 119.0 92 66.3
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.8e-25 118.6 85 64.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.7e-25 117.9 92 66.3
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.4e-24 115.5 76 72.4
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.1e-24 115.2 92 67.4
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.0e-23 112.5 94 63.8
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.2e-21 104.8 93 61.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 3.0e-19 98.6 67 71.6
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 8.7e-19 97.1 77 66.2
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.5e-18 96.3 54 72.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.6e-17 91.7 76 65.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.1e-16 88.6 77 61.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 4.0e-16 88.2 67 65.7
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 4.0e-16 88.2 77 63.6
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.0e-15 85.9 78 61.5
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.6e-15 85.5 75 58.7
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 4.4e-15 84.7 77 63.6
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.7e-14 82.8 103 51.5
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.4e-14 80.9 113 49.6
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.1e-13 77.4 77 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.3e-11 73.2 85 49.4
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-11 73.2 83 47.0
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.6e-09 65.1 35 74.3
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 4.8e-09 64.7 36 75.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 6.2e-09 64.3 105 36.2
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 5.3e-08 61.2 56 53.6
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.8e-07 57.8 74 41.9
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.7e-06 56.2 62 51.6
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.2e-06 55.8 104 36.5
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.2e-06 55.8 84 38.1
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 6.4e-06 54.3 64 51.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 6.4e-06 54.3 64 51.6


User provided reference genes

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