Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 5.3e-23 110.2 55 100.0
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 4.2e-20 100.5 55 87.3
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 1.3e-18 95.5 55 81.8
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 3.0e-18 94.4 53 86.8
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 3.0e-18 94.4 53 86.8
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 3.9e-18 94.0 55 85.5
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 1.5e-17 92.0 53 83.0
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 3.3e-17 90.9 54 79.6
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 3.3e-17 90.9 54 83.3
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 3.3e-17 90.9 55 81.8
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 4.3e-17 90.5 55 76.4
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 5.7e-17 90.1 55 76.4
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 7.4e-17 89.7 55 78.2
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 7.4e-17 89.7 55 74.5
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 7.4e-17 89.7 55 74.5
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 9.6e-17 89.4 53 79.2
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 1.3e-16 89.0 52 78.8
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 1.3e-16 89.0 55 80.0
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 2.1e-16 88.2 51 82.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 4.8e-16 87.0 53 79.2
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 6.2e-16 86.7 55 72.7
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 1.1e-15 85.9 56 78.6
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.4e-15 85.5 53 77.4
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 1.8e-15 85.1 53 75.5
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 2.4e-15 84.7 54 75.9
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 3.1e-15 84.3 58 74.1
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 4.0e-15 84.0 53 75.5
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 5.3e-15 83.6 55 76.4
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 2.0e-14 81.6 54 68.5
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 5.8e-14 80.1 54 70.4
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 5.8e-14 80.1 54 70.4
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 5.8e-14 80.1 54 70.4
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 1.7e-13 78.6 49 81.6
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 2.2e-13 78.2 63 65.1
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 3.8e-13 77.4 54 68.5
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 3.8e-13 77.4 54 68.5
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 3.8e-13 77.4 54 68.5
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 3.8e-13 77.4 54 68.5
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 3.8e-13 77.4 47 76.6
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 6.5e-13 76.6 63 65.1
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 1.1e-12 75.9 56 69.6
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 1.4e-12 75.5 56 67.9
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 4.2e-12 73.9 58 65.5
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.2e-11 72.4 38 84.2
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.2e-11 72.4 38 86.8
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 1.6e-11 72.0 57 66.7
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 1.6e-11 72.0 49 71.4
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 6.1e-11 70.1 35 85.7
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 6.1e-11 70.1 35 85.7
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 7.9e-11 69.7 53 66.0
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 3.9e-10 67.4 35 88.6
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 3.9e-10 67.4 36 83.3
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 5.1e-10 67.0 37 81.1
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 5.1e-10 67.0 37 81.1
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 5.1e-10 67.0 37 78.4
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 5.1e-10 67.0 63 55.6
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 6.7e-10 66.6 61 55.7
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.5e-09 65.5 36 77.8
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 1.5e-09 65.5 37 81.1
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 1.1e-07 59.3 55 56.4
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 5.3e-07 57.0 32 78.1
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 9.0e-07 56.2 36 69.4
DCAR_021460 Daucus carota HOM05D008250 ORTHO05D010361 3.4e-06 54.3 37 64.9


User provided reference genes

Program Settings