Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 1.3e-97 359.8 183 100.0
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 4.4e-58 228.4 155 69.0
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.4e-58 228.4 154 68.8
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 5.8e-58 228.0 154 66.9
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.6e-55 219.9 157 64.3
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 4.6e-55 218.4 155 70.3
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 1.7e-54 216.5 154 65.6
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 1.1e-53 213.8 153 66.7
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 2.1e-52 209.5 157 64.3
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 3.6e-52 208.8 176 55.7
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 1.1e-51 207.2 150 62.7
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 1.1e-51 207.2 151 63.6
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 4.0e-51 205.3 153 61.4
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 5.2e-51 204.9 153 62.1
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 5.2e-51 204.9 154 64.3
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 6.8e-51 204.5 153 62.1
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 6.8e-51 204.5 153 62.7
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 8.9e-51 204.1 159 59.1
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 8.9e-51 204.1 155 62.6
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 2.0e-50 203.0 153 62.1
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 4.4e-50 201.8 154 61.7
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 4.4e-50 201.8 157 61.1
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 7.6e-50 201.1 153 61.4
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 7.6e-50 201.1 153 61.4
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 9.9e-50 200.7 154 58.4
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 1.3e-49 200.3 153 60.8
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 2.2e-49 199.5 151 62.3
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 8.4e-49 197.6 152 60.5
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 1.4e-48 196.8 164 56.7
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 2.4e-48 196.1 157 60.5
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 3.2e-48 195.7 148 62.2
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 4.1e-48 195.3 153 60.1
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 7.1e-48 194.5 151 60.9
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 1.6e-47 193.4 165 57.6
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 1.6e-47 193.4 165 57.6
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 1.6e-47 193.4 154 61.7
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 4.6e-47 191.8 150 64.7
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 6.0e-47 191.4 149 61.7
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 7.8e-47 191.0 163 57.7
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 2.3e-46 189.5 163 57.1
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 2.5e-45 186.0 146 60.3
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 4.3e-45 185.3 158 56.3
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 5.6e-45 184.9 144 59.0
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 7.3e-45 184.5 147 58.5
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 1.2e-44 183.7 155 54.2
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 2.1e-44 183.0 148 55.4
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 6.2e-44 181.4 153 54.9
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 8.1e-44 181.0 152 57.2
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 1.1e-43 180.6 147 57.1
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.4e-43 180.3 151 55.0
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 1.4e-43 180.3 175 53.1
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 1.8e-43 179.9 152 58.6
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 2.4e-43 179.5 155 55.5
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 2.4e-43 179.5 149 57.7
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 3.1e-43 179.1 151 55.0
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 4.0e-43 178.7 154 56.5
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 4.0e-43 178.7 148 55.4
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 9.0e-43 177.6 154 56.5
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 9.0e-43 177.6 138 63.0
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.2e-42 177.2 144 56.9
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 1.5e-42 176.8 155 56.1
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 3.4e-42 175.6 159 54.1
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 5.8e-42 174.9 158 55.7
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 1.7e-41 173.3 155 55.5
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 1.7e-41 173.3 156 53.8
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 2.9e-41 172.6 152 53.3
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 8.4e-41 171.0 151 52.3
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 2.4e-40 169.5 147 54.4
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 5.4e-40 168.3 155 52.3
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 7.1e-40 167.9 167 53.3
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 1.2e-39 167.2 158 53.2
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 3.5e-39 165.6 149 53.7
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 1.7e-38 163.3 146 54.1
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.7e-38 163.3 121 66.9
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.1e-37 160.6 149 51.7
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 7.3e-37 157.9 155 50.3
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 1.6e-36 156.8 152 55.3
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.6e-36 156.8 150 52.0
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.1e-36 156.4 142 56.3
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 4.8e-36 155.2 150 52.0
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.1e-35 154.1 149 53.7
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.1e-35 154.1 149 53.7
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 1.1e-35 154.1 150 50.7
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 2.4e-35 152.9 155 47.1
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 6.9e-35 151.4 149 48.3
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 9.0e-35 151.0 149 49.0
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 7.6e-34 147.9 174 45.4
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 4.9e-33 145.2 129 56.6
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 2.4e-32 142.9 151 42.4
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 3.0e-30 136.0 109 57.8
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 8.7e-30 134.4 108 57.4
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 1.9e-29 133.3 158 43.0
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 7.4e-29 131.3 148 48.6
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 4.8e-28 128.6 119 51.3
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 4.0e-27 125.6 140 45.0
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 1.3e-25 120.6 148 45.3
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 4.9e-25 118.6 174 42.5
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 1.9e-24 116.7 111 49.5
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 4.2e-24 115.5 124 44.4
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 4.6e-23 112.1 140 45.0
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 3.0e-22 109.4 97 53.6
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 2.5e-21 106.3 131 45.8
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 3.3e-21 105.9 95 53.7
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 5.6e-21 105.1 105 43.8
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 1.3e-20 104.0 92 55.4
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 8.2e-20 101.3 108 45.4
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 1.8e-19 100.1 101 49.5
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 2.0e-18 96.7 112 50.0
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 4.5e-18 95.5 154 39.0
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 3.8e-17 92.4 107 50.5
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 4.9e-17 92.0 118 40.7
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.9e-17 92.0 154 33.1
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.1e-16 90.9 83 54.2
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 1.9e-16 90.1 135 36.3
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 9.3e-16 87.8 93 41.9
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 4.6e-15 85.5 114 41.2
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 4.6e-15 85.5 127 37.0
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 5.1e-14 82.0 142 33.8
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 5.1e-14 82.0 82 48.8
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 3.3e-13 79.3 78 46.2
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.3e-12 77.4 63 55.6
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 2.9e-09 66.2 59 52.5
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 3.2e-08 62.8 129 29.5
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 5.5e-08 62.0 128 28.1
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 2.7e-07 59.7 117 28.2
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.7e-07 59.7 120 26.7
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.6e-07 59.3 127 29.1
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.6e-07 59.3 127 29.1
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.6e-07 59.3 127 29.1
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 4.6e-07 58.9 125 28.0
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 7.9e-07 58.2 125 31.2
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 1.4e-06 57.4 113 28.3
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 1.4e-06 57.4 114 26.3
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.4e-06 57.4 113 30.1
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 1.4e-06 57.4 120 27.5
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 1.8e-06 57.0 124 27.4
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 1.8e-06 57.0 113 28.3
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 2.3e-06 56.6 124 29.8
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.3e-06 56.6 123 27.6
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 2.3e-06 56.6 113 28.3
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.3e-06 56.6 113 29.2
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 2.3e-06 56.6 113 29.2
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 2.3e-06 56.6 123 29.3
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 2.3e-06 56.6 120 25.8
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 2.3e-06 56.6 113 27.4
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 3.0e-06 56.2 113 29.2
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.0e-06 56.2 132 29.5
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 3.9e-06 55.8 113 29.2
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 5.1e-06 55.5 113 26.5
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 5.1e-06 55.5 113 27.4
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.1e-06 55.5 121 31.4
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 5.1e-06 55.5 124 25.8
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 5.1e-06 55.5 124 25.8
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 5.1e-06 55.5 124 25.8
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 6.7e-06 55.1 126 27.8
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 6.7e-06 55.1 124 25.8
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 8.8e-06 54.7 120 29.2
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 8.8e-06 54.7 113 28.3
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 8.8e-06 54.7 117 26.5
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 8.8e-06 54.7 114 28.1
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 8.8e-06 54.7 123 26.0
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 8.8e-06 54.7 118 27.1
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 8.8e-06 54.7 118 26.3


User provided reference genes

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