Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 4456.7 2464 100.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 3850.8 2475 87.7
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2655.9 2490 64.2
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2651.3 2503 64.6
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2546.5 2487 62.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2525.7 2521 61.3
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2520.0 2489 63.3
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2503.8 2531 62.1
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2475.3 2547 61.6
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2404.0 2556 59.3
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2389.0 2523 59.2
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2382.8 2525 59.1
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2376.3 2528 58.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2351.2 2518 58.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2337.0 2529 58.1
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2329.3 2522 58.2
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2316.6 2518 58.1
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2311.2 2499 58.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2303.1 2520 58.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2295.4 2564 57.8
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2291.2 2560 57.7
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2239.9 2504 57.5
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2235.3 2585 57.2
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2219.1 2590 56.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2211.0 2592 56.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2207.2 2583 56.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2198.3 2518 56.2
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2196.8 2542 56.3
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2187.5 2478 57.0
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2182.5 2518 56.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2179.1 2518 56.1
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2174.8 2505 56.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2163.7 2523 56.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2115.9 2566 53.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2079.7 2531 54.0
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2042.3 2512 53.9
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2041.2 2521 54.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2028.4 2539 53.7
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2011.5 2551 54.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1989.2 2572 53.0
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1978.4 2510 53.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1973.0 2526 52.9
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1971.4 2552 53.5
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1953.7 2525 52.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1949.1 2529 53.3
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1944.9 2531 52.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1931.0 2500 52.5
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1924.1 2518 52.8
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1892.5 2546 50.4
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1892.5 2565 51.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1887.5 2563 51.5
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1884.4 2590 49.1
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1875.1 2025 59.2
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1862.4 2209 55.0
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1859.7 2527 50.6
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1858.2 2529 50.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1850.5 2312 53.5
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1846.6 2526 50.4
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1843.9 2516 52.1
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1822.0 2511 50.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1814.7 2532 49.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1810.0 2507 50.5
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1807.7 2512 49.8
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1795.8 2522 50.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1782.7 2533 50.5
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1781.9 2530 50.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1780.4 2517 50.2
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1779.2 2650 47.9
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1771.9 2542 50.0
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1768.1 2511 48.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1757.7 1880 60.2
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1711.8 2406 49.7
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1709.9 2536 48.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1708.0 2515 49.4
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1696.0 2517 49.2
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1686.8 2561 47.5
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1605.9 2530 47.9
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1605.9 2530 47.3
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1593.9 2467 46.7
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1581.6 2521 46.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1569.7 2416 46.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1548.1 2405 48.2
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1529.2 2517 45.7
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1433.3 2512 44.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1423.7 2643 41.4
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1403.7 2639 41.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1394.0 2542 41.9
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1335.9 2550 41.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1334.7 2527 42.8
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1323.1 2515 43.1
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1320.1 2504 42.8
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1311.2 2458 42.8
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1310.4 2515 43.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1302.7 2483 42.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1273.8 2463 42.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1257.3 2479 41.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1225.7 2630 40.6
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1148.3 1715 50.1
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1148.3 2432 39.5
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1129.8 2418 39.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1125.5 2556 39.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1110.5 1294 54.8
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1087.8 1757 44.7
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 6.8e-303 1045.4 973 61.5
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 5.9e-299 1032.3 1066 60.5
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.1e-263 915.2 2524 37.4
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 3.1e-255 887.1 2438 37.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.9e-255 885.9 1026 57.9
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.5e-241 841.6 2435 37.1
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.5e-241 841.6 2435 37.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 2.5e-241 840.9 2747 35.3
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.1e-239 833.9 2442 37.3
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.2e-238 832.0 2438 36.9
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.3e-237 828.6 2477 36.8
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.4e-220 769.2 723 61.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.1e-196 692.6 961 51.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.6e-195 687.6 984 48.5
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.3e-184 652.5 1935 36.2
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.8e-184 651.4 1796 33.9
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.6e-177 628.2 2568 31.3
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 4.7e-171 607.4 587 63.0
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-167 596.3 1795 35.0
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.1e-138 498.4 461 59.2
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 2.1e-131 475.7 789 43.0
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 4.9e-128 464.5 1341 36.3
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 4.2e-127 461.5 940 38.5
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.5e-124 452.2 677 48.0
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.8e-120 438.3 515 54.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 9.4e-103 380.6 2936 29.0
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.8e-99 368.2 1229 32.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.9e-88 332.4 2818 28.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 2.0e-84 319.7 943 32.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 2.1e-78 299.7 297 56.2
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.9e-64 252.7 1040 32.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.8e-62 246.1 562 36.8
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.8e-61 243.4 507 41.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-60 240.7 2756 26.9
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-54 220.7 261 54.0
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 8.9e-53 214.5 261 53.3
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.8e-52 211.1 2738 26.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.8e-46 193.0 468 36.1
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 3.6e-46 192.6 240 54.2
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.3e-40 174.1 1009 27.3
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 5.6e-39 168.7 317 39.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.4e-37 163.3 566 30.7
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-32 147.5 202 49.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.3e-31 142.5 175 52.0
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.3e-24 120.2 310 33.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 1.5e-23 117.5 324 34.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 7.3e-23 115.2 1951 26.1
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.6e-22 112.8 225 40.4
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.9e-11 76.6 208 34.6
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 4.9e-11 75.9 142 43.0
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.9e-11 75.9 71 60.6
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 4.9e-11 75.9 71 60.6
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 5.5e-10 72.4 84 52.4
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 2.1e-09 70.5 149 38.9
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.8e-08 67.4 74 56.8
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 4.3e-07 62.8 120 38.3
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 2.8e-06 60.1 176 31.8


User provided reference genes

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