Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 3.4e-46 188.0 93 100.0
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 3.5e-27 124.8 93 68.8
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 1.4e-15 86.3 96 47.9
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 1.8e-15 85.9 94 52.1
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 1.5e-14 82.8 104 47.1
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.5e-14 82.8 95 42.1
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 7.6e-14 80.5 100 50.0
Thecc.01G053200 Theobroma cacao HOM05D007434 ORTHO05D009541 9.9e-14 80.1 98 52.0
FAN28G0171 Fragaria x ananassa HOM05D007434 ORTHO05D009541 2.9e-13 78.6 100 49.0
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 2.9e-13 78.6 83 53.0
CiPaw.01G021300 Carya illinoinensis HOM05D007434 ORTHO05D009541 1.9e-12 75.9 88 50.0
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 5.4e-12 74.3 95 43.2
Oeu050758.1 Olea europaea HOM05D007434 ORTHO05D009541 1.2e-11 73.2 84 45.2
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.6e-11 72.8 99 45.5
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 2.7e-11 72.0 91 45.1
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 2.7e-11 72.0 85 44.7
TPR.G19007 Trifolium pratense HOM05D007434 ORTHO05D009541 4.6e-11 71.2 93 46.2
FvH4_1g15720 Fragaria vesca HOM05D007434 ORTHO05D009541 6.0e-11 70.9 87 50.6
FAN19G1812 Fragaria x ananassa HOM05D007434 ORTHO05D019139 6.0e-11 70.9 87 50.6
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 7.8e-11 70.5 89 42.7
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 1.0e-10 70.1 83 50.6
DCAR_025721 Daucus carota HOM05D007434 ORTHO05D009541 2.3e-10 68.9 83 48.2
Rhsim08G0102100 Rhododendron simsii HOM05D007434 ORTHO05D009541 2.3e-10 68.9 89 47.2
Aqoxy6G01382 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 3.9e-10 68.2 93 39.8
CSS0004315 Camellia sinensis var. sinensis HOM05D035102 ORTHO05D016155 6.6e-10 67.4 98 37.8
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 6.6e-10 67.4 82 47.6
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 6.6e-10 67.4 82 48.8
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 8.7e-10 67.0 88 43.2
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 1.1e-09 66.6 108 41.7
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 1.5e-09 66.2 83 49.4
Gohir.A11G046200 Gossypium hirsutum HOM05D007434 ORTHO05D009541 2.5e-09 65.5 96 46.9
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 2.5e-09 65.5 96 42.7
Sed0004872 Sechium edule HOM05D007434 ORTHO05D009541 3.3e-09 65.1 92 43.5
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 5.6e-09 64.3 85 43.5
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 5.6e-09 64.3 88 39.8
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 5.6e-09 64.3 89 42.7
Gohir.A11G190600 Gossypium hirsutum HOM05D007434 ORTHO05D009541 7.3e-09 63.9 97 38.1
Sabra07G0037000 Salix brachista HOM05D014707 ORTHO05D009541 7.3e-09 63.9 82 46.3
Gorai.007G211200 Gossypium raimondii HOM05D007434 ORTHO05D009541 9.6e-09 63.5 97 38.1
Lalb_Chr16g0378251 Lupinus albus HOM05D007434 ORTHO05D009541 9.6e-09 63.5 96 39.6
Lalb_Chr16g0378431 Lupinus albus HOM05D007434 ORTHO05D009541 9.6e-09 63.5 96 39.6
Gohir.D11G197400 Gossypium hirsutum HOM05D007434 ORTHO05D009541 1.3e-08 63.2 97 37.1
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 2.1e-08 62.4 83 43.4
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 2.8e-08 62.0 91 39.6
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.8e-08 62.0 98 39.8
Sc03g0001440 Simmondsia chinensis HOM05D012520 ORTHO05D013638 2.8e-08 62.0 93 37.6
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 3.6e-08 61.6 89 40.4
ClCG01G016720 Citrullus lanatus HOM05D007434 ORTHO05D009541 3.6e-08 61.6 85 45.9
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 8.1e-08 60.5 94 44.7
Cpa.g.sc55.177 Carica papaya HOM05D007434 ORTHO05D009541 1.1e-07 60.1 117 38.5
Glyma.01G184800 Glycine max HOM05D007434 ORTHO05D009541 1.1e-07 60.1 100 38.0
Lj4g0023681 Lotus japonicus HOM05D007434 ORTHO05D009541 1.4e-07 59.7 104 39.4
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 1.4e-07 59.7 93 43.0
TAR628G0228 Trochodendron aralioides HOM05D007434 ORTHO05D016155 1.4e-07 59.7 92 39.1
Glyma.11G057400 Glycine max HOM05D007434 ORTHO05D009541 1.8e-07 59.3 97 38.1
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 2.4e-07 58.9 84 36.9
BolC2t12536H Brassica oleracea HOM05D012520 ORTHO05D013638 5.3e-07 57.8 87 42.5
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 5.3e-07 57.8 99 40.4
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 5.3e-07 57.8 100 37.0
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 5.3e-07 57.8 99 41.4
Lsat_1_v5_gn_4_167700 Lactuca sativa HOM05D007434 ORTHO05D009541 6.9e-07 57.4 89 39.3
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 6.9e-07 57.4 86 44.2
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 9.0e-07 57.0 84 44.0
Aqoxy6G01380 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 1.2e-06 56.6 91 37.4
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 1.2e-06 56.6 85 42.4
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 1.2e-06 56.6 85 41.2
Lj2g0026149 Lotus japonicus HOM05D007434 ORTHO05D009541 1.2e-06 56.6 86 41.9
Lalb_Chr14g0368851 Lupinus albus HOM05D012250 ORTHO05D014447 1.2e-06 56.6 79 44.3
Sed0002185 Sechium edule HOM05D007434 ORTHO05D009541 1.2e-06 56.6 94 40.4
CsaV3_6G043140 Cucumis sativus L. HOM05D007434 ORTHO05D009541 2.0e-06 55.8 92 44.6
BcaC03g18397 Brassica carinata HOM05D012520 ORTHO05D013638 2.6e-06 55.5 87 41.4
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 2.6e-06 55.5 101 36.6
Haze_15425 Corylus avellana HOM05D007434 ORTHO05D009541 4.4e-06 54.7 75 41.3
A07p17070 Brassica napus HOM05D012520 ORTHO05D013638 5.8e-06 54.3 89 37.1
BraA07t29434Z Brassica rapa HOM05D012520 ORTHO05D013638 5.8e-06 54.3 89 37.1
Hma1.2p1_0200F.1_g086080 Hydrangea macrophylla HOM05D008581 ORTHO05D009966 5.8e-06 54.3 123 30.9
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 5.8e-06 54.3 110 35.5
TPR.G21269 Trifolium pratense HOM05D007434 ORTHO05D009541 5.8e-06 54.3 85 41.2
Atru.chr3.391 Acer truncatum HOM05D007434 ORTHO05D009541 7.6e-06 53.9 86 33.7
CDE06G1671 Ceratophyllum demersum HOM05D051429 ORTHO05D009541 7.6e-06 53.9 93 36.6
Dinv39336 Davidia involucrata HOM05D035102 ORTHO05D016155 7.6e-06 53.9 102 39.2
Phvul.002G020200 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 7.6e-06 53.9 89 43.8
Rhsim10G0119400 Rhododendron simsii HOM05D008581 ORTHO05D009966 7.6e-06 53.9 34 64.7
arahy.Tifrunner.gnm1.ann1.0D7IHD Arachis hypogaea HOM05D007434 ORTHO05D009541 9.9e-06 53.5 87 43.7
Sp2g29840 Schrenkiella parvula HOM05D012520 ORTHO05D013638 9.9e-06 53.5 95 34.7


User provided reference genes

Program Settings