Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 0.0e+00 1382.9 718 100.0
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 0.0e+00 1100.9 720 78.9
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 0.0e+00 1081.6 720 77.8
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 1.7e-307 1058.9 730 77.3
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 8.3e-302 1040.0 722 77.4
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 4.1e-301 1037.7 722 76.2
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 5.4e-301 1037.3 721 76.8
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 5.4e-301 1037.3 727 76.6
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 6.8e-296 1020.4 731 75.4
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.2e-295 1019.6 727 76.1
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 9.2e-293 1010.0 724 75.7
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 1.5e-290 1002.7 718 72.0
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 3.3e-290 1001.5 719 72.7
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 1.2e-289 999.6 723 73.2
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.2e-289 999.6 721 70.6
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 3.1e-288 995.0 717 72.2
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 5.2e-288 994.2 719 71.2
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 2.0e-287 992.3 723 74.4
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 3.4e-287 991.5 716 72.8
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 4.4e-287 991.1 718 70.8
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 1.7e-286 989.2 718 70.8
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.9e-286 988.4 717 72.4
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 4.9e-286 987.6 717 72.7
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 3.2e-285 984.9 726 72.5
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 4.1e-285 984.6 720 72.4
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.1e-285 984.6 718 73.1
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 3.5e-284 981.5 730 72.6
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.5e-284 981.5 721 73.8
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 6.0e-284 980.7 729 72.7
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.0e-284 980.7 720 71.1
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 7.8e-284 980.3 718 71.2
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 7.8e-284 980.3 724 72.7
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 1.0e-283 979.9 721 74.2
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 1.7e-283 979.2 716 72.3
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.3e-283 978.8 721 74.1
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.0e-283 978.4 721 73.5
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.9e-283 978.0 721 73.4
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 4.3e-282 974.5 722 71.1
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 8.9e-280 966.8 724 71.8
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.6e-279 965.3 718 70.3
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 1.2e-276 956.4 723 69.4
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 2.7e-276 955.3 720 70.0
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 8.6e-275 950.3 737 70.8
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 5.6e-274 947.6 720 70.1
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 1.8e-272 942.6 724 70.4
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.4e-272 942.2 718 69.6
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.4e-272 942.2 718 69.6
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.8e-272 940.6 718 69.5
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.9e-270 935.3 720 69.3
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 1.2e-268 929.9 724 70.4
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 5.1e-267 924.5 798 64.2
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 9.6e-266 920.2 636 75.9
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 2.8e-265 918.7 719 69.0
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 5.1e-259 897.9 730 68.2
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 2.4e-256 889.0 943 55.6
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 9.9e-255 883.6 731 67.3
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 1.7e-254 882.9 735 67.8
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.2e-254 882.5 718 66.6
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 1.2e-252 876.7 720 67.8
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 4.6e-252 874.8 726 65.6
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 6.0e-252 874.4 726 65.8
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 3.3e-250 868.6 593 75.4
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 4.3e-250 868.2 724 66.4
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 5.3e-248 861.3 725 64.4
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 1.5e-247 859.8 724 66.7
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 2.2e-246 855.9 725 64.0
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.9e-246 855.5 728 64.8
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 8.4e-246 854.0 720 66.9
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 1.9e-245 852.8 724 66.6
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 4.6e-244 848.2 727 63.3
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 3.0e-243 845.5 758 62.9
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 7.4e-242 840.9 710 66.1
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 4.8e-241 838.2 929 53.8
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 5.3e-240 834.7 724 64.2
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 4.5e-239 831.6 721 64.9
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 5.9e-239 831.2 718 64.8
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.1e-237 827.0 721 62.8
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 9.3e-237 823.9 730 63.6
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 5.1e-235 818.1 728 60.4
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 3.3e-234 815.5 772 60.6
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 1.6e-233 813.1 727 60.8
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 2.4e-232 809.3 730 61.8
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 1.7e-230 803.1 717 62.3
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.1e-229 800.4 733 59.3
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 3.9e-227 792.0 723 62.0
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 7.4e-226 787.7 730 60.4
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 1.8e-224 783.1 588 69.6
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 2.4e-224 782.7 728 59.5
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 5.3e-224 781.6 728 59.2
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 1.5e-223 780.0 551 73.1
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 4.5e-223 778.5 728 59.1
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 2.2e-222 776.2 729 59.3
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 3.0e-219 765.8 728 58.9
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 3.0e-219 765.8 752 57.2
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 4.5e-215 751.9 750 59.1
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 4.0e-211 738.8 739 56.2
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 8.8e-211 737.6 583 69.8
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 8.2e-209 731.1 733 57.4
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.1e-208 730.7 625 64.0
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 3.8e-206 722.2 620 64.0
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 3.6e-204 715.7 533 67.7
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 4.0e-203 712.2 716 56.4
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 3.2e-184 649.4 598 62.2
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 8.0e-180 634.8 596 57.9
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 7.6e-162 575.1 519 62.2
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 9.0e-139 498.4 787 42.3
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 2.2e-137 493.8 792 40.2
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 1.8e-131 474.2 464 58.6
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 1.4e-115 421.4 721 37.4
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 1.5e-106 391.3 298 70.5
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 9.4e-104 382.1 274 71.2
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.5e-96 358.2 449 49.4
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 4.5e-82 310.1 434 45.4
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.1e-80 305.4 312 57.4
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 8.6e-65 252.7 193 67.9
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-59 235.7 182 67.6
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 2.4e-59 234.6 369 43.1
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 1.6e-58 231.9 287 50.9
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 1.9e-48 198.4 155 73.5
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 4.0e-46 190.7 154 61.7
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.1e-43 182.6 133 78.2
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 1.6e-42 178.7 129 82.9
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 3.9e-41 174.1 97 87.6
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 7.3e-40 169.9 107 82.2
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 6.4e-36 156.8 144 61.8
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.3e-33 148.3 128 64.8
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 3.5e-26 124.4 154 49.4
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 3.5e-26 124.4 114 58.8
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 1.2e-10 72.8 133 39.8
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 9.7e-08 63.2 121 39.7
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 3.7e-07 61.2 140 35.7
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 3.1e-06 58.2 35 82.9


User provided reference genes

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