Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 1.9e-124 449.1 217 100.0
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 2.8e-35 152.9 157 42.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 2.8e-35 152.9 205 38.0
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 6.9e-34 148.3 176 40.3
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 2.0e-33 146.7 190 38.9
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 2.6e-33 146.4 175 40.0
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 2.6e-33 146.4 162 40.7
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.6e-33 146.4 175 39.4
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 5.8e-33 145.2 227 33.9
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 7.6e-33 144.8 166 40.4
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 7.6e-33 144.8 166 38.6
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.3e-32 144.1 165 42.4
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 8.4e-32 141.4 193 39.4
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 1.4e-31 140.6 163 40.5
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.4e-31 140.6 178 38.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.9e-31 140.2 192 39.1
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 2.5e-31 139.8 163 40.5
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 3.2e-31 139.4 163 40.5
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.2e-31 139.4 161 41.0
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.5e-31 138.7 170 38.8
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 5.5e-31 138.7 166 39.2
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 9.3e-31 137.9 163 39.9
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 1.6e-30 137.1 167 39.5
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 1.6e-30 137.1 159 40.9
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.1e-30 136.7 193 38.9
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.7e-30 136.3 162 39.5
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 2.7e-30 136.3 163 39.3
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 4.6e-30 135.6 210 34.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 1.0e-29 134.4 166 38.0
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.0e-29 134.4 172 37.2
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.3e-29 134.0 166 39.8
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.3e-29 134.0 165 36.4
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.8e-29 133.7 157 40.8
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 2.3e-29 133.3 174 37.4
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 2.3e-29 133.3 164 36.6
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 2.3e-29 133.3 162 39.5
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.3e-29 133.3 174 37.9
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 3.0e-29 132.9 203 36.0
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.9e-29 132.5 165 40.0
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 3.9e-29 132.5 167 38.9
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 6.7e-29 131.7 167 35.9
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 8.7e-29 131.3 167 35.9
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 8.7e-29 131.3 154 40.3
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.1e-28 131.0 217 35.0
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 1.5e-28 130.6 205 35.6
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.5e-28 130.6 176 35.8
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.5e-28 129.8 166 39.2
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 3.3e-28 129.4 167 37.7
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 3.3e-28 129.4 167 35.9
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 4.3e-28 129.0 206 34.5
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 4.3e-28 129.0 166 38.0
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 5.7e-28 128.6 197 35.5
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 7.4e-28 128.3 166 36.7
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 7.4e-28 128.3 194 37.1
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 7.4e-28 128.3 176 35.8
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 9.6e-28 127.9 174 36.2
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 9.6e-28 127.9 157 38.9
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.3e-27 127.5 176 35.8
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-27 127.1 179 37.4
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.6e-27 127.1 166 39.2
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.1e-27 126.7 223 32.3
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 2.1e-27 126.7 200 34.5
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 2.8e-27 126.3 170 35.3
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.8e-27 126.3 166 39.2
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 2.8e-27 126.3 171 37.4
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 3.7e-27 125.9 179 36.9
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 3.7e-27 125.9 179 36.9
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 3.7e-27 125.9 170 39.4
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 3.7e-27 125.9 166 38.0
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.8e-27 125.6 179 37.4
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 8.2e-27 124.8 165 39.4
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.2e-27 124.8 166 38.6
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 8.2e-27 124.8 166 36.7
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 8.2e-27 124.8 182 36.8
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.4e-26 124.0 161 37.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.4e-26 124.0 225 31.1
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.8e-26 123.6 169 33.1
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 3.1e-26 122.9 167 37.1
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 3.1e-26 122.9 179 35.2
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 6.9e-26 121.7 176 33.0
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 9.0e-26 121.3 159 37.1
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 9.0e-26 121.3 166 34.9
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 9.0e-26 121.3 167 35.3
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.2e-25 120.9 163 36.2
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-25 119.8 170 32.9
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-25 119.8 170 32.9
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-25 119.8 175 34.9
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 2.6e-25 119.8 181 34.8
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 3.4e-25 119.4 166 34.3
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-25 119.4 166 34.3
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 4.5e-25 119.0 165 35.8
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 7.6e-25 118.2 184 34.2
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 7.6e-25 118.2 170 35.9
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-24 117.5 182 34.6
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.7e-24 117.1 194 33.5
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.7e-24 117.1 174 32.8
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.9e-24 116.3 184 34.8
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 6.5e-24 115.2 167 35.9
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 6.5e-24 115.2 167 35.9
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.1e-23 114.4 159 33.3
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-23 114.4 182 32.4
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-23 114.4 182 32.4
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.4e-23 114.0 194 33.0
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.4e-23 114.0 174 34.5
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-23 114.0 170 36.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.9e-23 113.6 161 34.2
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.3e-23 111.3 188 34.0
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.6e-22 110.5 166 32.5
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-22 110.2 180 35.6
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 2.1e-22 110.2 188 33.0
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.7e-22 109.8 212 31.6
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 4.6e-22 109.0 166 34.3
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-21 107.5 173 34.1
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.3e-21 106.7 124 41.1
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 2.3e-21 106.7 170 33.5
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-21 105.9 169 35.5
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-21 105.9 169 34.3
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-21 105.9 170 33.5
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 6.7e-21 105.1 169 33.7
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 6.7e-21 105.1 177 32.8
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 8.7e-21 104.8 222 28.4
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 1.1e-20 104.4 169 33.7
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.9e-20 103.6 97 46.4
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 4.3e-20 102.4 166 33.7
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.7e-20 102.1 169 32.0
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 7.4e-20 101.7 169 31.4
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 9.7e-20 101.3 177 33.3
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 4.8e-19 99.0 143 35.0
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 4.8e-19 99.0 169 32.5
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.1e-18 97.8 123 41.5
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 1.4e-18 97.4 170 31.2
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.4e-18 96.7 111 42.3
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 3.1e-18 96.3 157 36.3
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.1e-18 95.9 220 28.2
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 2.6e-17 93.2 169 29.0
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 3.4e-17 92.8 208 26.9
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 1.0e-16 91.3 136 36.0
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 5.0e-16 89.0 216 28.2
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 6.5e-16 88.6 160 34.4
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 8.5e-16 88.2 169 29.0
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 1.4e-15 87.4 101 37.6
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 1.9e-15 87.0 157 28.0
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-14 84.3 160 31.9
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.6e-14 84.0 99 39.4
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 3.0e-13 79.7 142 27.5
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 5.1e-13 79.0 98 34.7
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 5.1e-13 79.0 95 40.0
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 5.7e-12 75.5 98 34.7
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.3e-11 74.3 97 35.1
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 1.3e-11 74.3 165 27.9
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.7e-11 73.9 169 28.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 2.2e-11 73.6 96 39.6
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.7e-11 72.8 166 30.7
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 1.4e-10 70.9 183 26.8
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 9.1e-10 68.2 101 33.7
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 2.6e-09 66.6 68 39.7
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 3.4e-09 66.2 95 40.0
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 2.9e-08 63.2 68 38.2
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 3.8e-08 62.8 100 34.0
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 5.0e-08 62.4 63 49.2
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 6.5e-08 62.0 135 25.2
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 5.5e-07 58.9 82 35.4


User provided reference genes

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