Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.3e-288 995.7 515 100.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 4.8e-235 817.8 512 79.5
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.2e-187 659.4 521 64.1
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 6.4e-187 657.9 522 63.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.3e-183 645.6 512 63.3
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.3e-183 645.6 512 63.3
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 8.0e-182 641.0 513 63.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 8.0e-182 641.0 512 63.5
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-181 639.8 512 62.7
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.2e-180 637.1 516 63.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 4.4e-180 635.2 533 60.8
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 3.7e-179 632.1 534 60.3
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 4.6e-177 625.2 509 62.1
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.8e-177 624.4 547 58.7
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.8e-177 624.4 547 58.7
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 7.8e-177 624.4 537 59.8
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.5e-175 620.2 530 60.2
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.6e-174 616.7 538 60.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 4.7e-174 615.1 526 59.7
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 6.2e-174 614.8 526 59.5
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.8e-173 613.2 519 60.1
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 5.2e-173 611.7 512 60.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.0e-172 609.8 530 59.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.4e-172 609.0 517 59.8
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.3e-171 607.1 522 60.9
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 9.2e-170 600.9 522 57.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.7e-169 599.4 528 58.5
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.7e-169 599.4 512 59.0
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.3e-168 597.0 520 58.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.3e-168 597.0 553 56.6
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 5.1e-168 595.1 513 59.3
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 5.6e-167 591.7 512 62.5
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 4.7e-166 588.6 531 58.8
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 6.2e-166 588.2 524 57.3
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.9e-165 584.3 554 55.8
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 9.9e-164 580.9 507 59.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 9.9e-164 580.9 509 56.6
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 6.4e-163 578.2 532 56.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.4e-162 575.1 552 55.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.7e-160 570.1 507 59.2
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 8.7e-160 567.8 521 56.0
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.6e-158 562.4 518 54.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.0e-156 556.6 532 54.3
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 6.4e-155 551.6 516 54.8
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 6.4e-155 551.6 521 55.1
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 7.1e-154 548.1 551 54.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.2e-153 547.4 546 54.0
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 3.5e-153 545.8 525 54.5
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.6e-151 537.7 508 57.5
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 3.6e-150 535.8 542 53.0
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.9e-149 531.6 476 57.1
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.5e-148 530.4 522 52.9
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 3.8e-147 525.8 527 52.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 8.4e-147 524.6 516 52.9
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.2e-146 522.7 512 53.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 4.2e-146 522.3 512 53.7
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 7.1e-146 521.5 547 51.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 9.3e-146 521.2 521 53.4
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.5e-145 519.2 512 53.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.0e-144 516.2 536 50.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.9e-143 513.5 530 51.9
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.5e-143 513.1 518 53.3
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.3e-143 512.7 512 53.3
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 9.6e-143 511.1 524 53.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-142 510.0 518 52.3
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 6.9e-141 505.0 517 51.1
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.9e-139 498.8 510 53.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.9e-139 498.8 546 49.3
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.9e-138 496.9 518 50.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.2e-138 496.1 523 51.8
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 4.2e-138 495.7 518 50.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.5e-138 495.4 517 50.3
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.7e-137 493.0 554 48.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 4.6e-137 492.3 542 50.0
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 2.3e-136 490.0 523 48.9
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 8.7e-136 488.0 515 50.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-135 487.6 517 50.1
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.1e-135 487.6 512 51.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 3.3e-135 486.1 517 49.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 4.3e-135 485.7 517 49.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 4.3e-135 485.7 529 50.7
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 9.6e-135 484.6 517 50.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.3e-134 484.2 502 50.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 8.2e-134 481.5 529 50.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.4e-133 479.9 518 50.0
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.1e-133 479.6 529 48.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.3e-133 478.8 533 52.9
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 6.9e-133 478.4 520 50.4
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.2e-132 477.6 503 49.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.5e-132 477.2 522 50.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.0e-132 476.9 517 50.5
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.6e-132 476.5 518 49.8
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.7e-131 473.8 516 48.6
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-131 473.8 513 49.9
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.8e-131 472.6 521 49.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 6.5e-131 471.9 521 50.5
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 7.9e-129 464.9 514 48.4
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.8e-128 463.8 554 45.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 5.7e-127 458.8 517 46.2
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 6.3e-126 455.3 510 49.2
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.5e-122 442.2 489 50.1
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-120 438.0 501 47.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.8e-120 437.2 561 44.2
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.8e-117 427.2 520 45.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.2e-113 414.5 523 43.8
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.1e-113 413.7 536 45.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.7e-113 412.5 532 45.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.9e-113 411.8 512 47.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 5.1e-112 409.1 503 43.7
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 5.7e-111 405.6 472 48.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.3e-110 404.4 533 41.8
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 6.5e-107 392.1 517 41.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-106 391.3 516 47.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.5e-106 391.0 518 47.5
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.2e-106 388.7 501 44.5
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.0e-99 368.2 408 49.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.2e-95 354.8 516 40.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.8e-94 350.1 550 39.1
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-89 334.3 509 39.3
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-89 334.3 508 39.6
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 8.0e-89 332.0 479 43.2
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.7e-87 325.9 516 39.0
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.0e-80 303.1 501 36.9
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-74 284.6 466 36.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-73 281.6 466 36.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.4e-69 267.3 517 34.4
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.3e-58 229.9 390 37.4
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-58 228.8 461 33.8
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-58 228.8 461 33.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.5e-50 204.9 150 62.7
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.3e-50 203.8 261 45.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.6e-47 194.1 144 69.4
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 3.0e-43 180.6 316 37.3
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.1e-41 174.5 392 32.1
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.1e-40 170.6 461 34.7
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.9e-39 165.6 530 25.5
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.1e-34 152.1 389 35.2
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 4.3e-34 150.2 537 27.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.1e-33 147.9 501 25.7
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-26 125.2 98 64.3
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.9e-26 124.8 449 27.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 4.8e-25 120.2 495 24.8
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-22 112.1 288 29.9
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 7.1e-21 106.3 431 21.8
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.9e-20 102.8 65 75.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.0e-19 102.4 85 57.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 3.9e-19 100.5 505 21.4
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.8e-17 93.6 383 23.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.4e-16 92.0 54 74.1
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.8e-16 91.7 56 76.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 9.3e-13 79.3 373 20.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.1e-12 76.6 82 48.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.9e-10 71.6 197 28.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 5.7e-10 70.1 123 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.4e-08 65.5 63 39.7


User provided reference genes

Program Settings