Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 4.5e-56 221.1 116 100.0
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-55 219.5 116 98.3
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.4e-54 216.1 116 95.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.0e-52 209.9 116 93.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.8e-52 209.1 116 94.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.3e-52 208.8 116 93.1
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.0e-52 208.4 116 94.0
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 3.0e-52 208.4 116 92.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 94.0
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.1e-51 206.5 115 93.0
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.5e-51 206.1 116 92.2
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.9e-51 205.7 113 94.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.9e-51 205.7 116 92.2
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.9e-51 205.7 116 91.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.9e-51 205.7 116 91.4
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.9e-51 205.7 113 93.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.9e-51 205.7 116 92.2
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.5e-51 205.3 116 91.4
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.5e-51 205.3 113 94.7
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 93.8
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 93.8
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 92.2
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 5.7e-51 204.1 116 92.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 7.4e-51 203.8 113 92.9
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 9.7e-51 203.4 116 91.4
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 93.8
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.6e-50 202.6 113 92.0
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.6e-50 202.6 113 92.9
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.2e-50 202.2 116 89.7
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 92.9
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 92.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 91.4
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 92.0
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.7e-50 201.4 116 91.4
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 91.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 90.6
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 4.8e-50 201.1 116 89.7
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 6.3e-50 200.7 113 92.0
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 6.3e-50 200.7 113 92.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 6.3e-50 200.7 116 89.7
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 91.5
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 91.5
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 91.5
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 8.2e-50 200.3 116 90.5
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 91.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 91.5
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 90.7
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 90.7
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 90.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 89.7
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.1e-49 199.9 116 90.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 92.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.4e-49 199.5 116 90.5
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.8e-49 199.1 108 93.5
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 89.7
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 89.7
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 89.7
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 89.7
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 88.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 91.2
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 115 88.7
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 115 88.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 92.0
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 4.1e-49 198.0 116 88.8
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 91.2
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 91.2
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 90.3
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 92.0
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 92.0
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 89.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 5.3e-49 197.6 115 89.6
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 9.0e-49 196.8 116 88.8
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 9.0e-49 196.8 116 88.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 9.0e-49 196.8 116 89.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.2e-48 196.4 116 88.8
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-48 196.4 116 87.9
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-48 196.4 116 87.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 89.4
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 88.5
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.0e-48 195.7 116 87.1
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.0e-48 195.7 116 87.9
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.0e-48 195.7 116 87.1
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 116 87.9
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.0e-48 195.7 110 91.8
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.6e-48 195.3 113 88.5
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.6e-48 195.3 116 87.9
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 3.4e-48 194.9 116 86.2
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-48 194.5 113 89.4
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 5.9e-48 194.1 116 87.1
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 86.3
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 86.3
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 88.5
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 88.9
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.7e-47 192.6 126 83.3
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 117 85.5
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 87.6
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.2e-47 192.2 116 82.8
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.9e-47 191.8 118 88.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.9e-47 191.8 116 84.5
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 3.8e-47 191.4 113 87.6
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 5.0e-47 191.0 116 83.6
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 83.6
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-46 189.5 105 92.4
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.9e-46 189.1 110 89.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.9e-46 189.1 116 84.5
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 4.2e-46 188.0 116 86.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 84.1
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 9.4e-46 186.8 116 86.2
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 85.0
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 4.6e-45 184.5 116 81.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.6e-45 184.5 110 85.5
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 6.1e-45 184.1 116 82.8
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 85.0
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.0e-44 183.3 116 82.8
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.0e-44 183.3 109 83.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.4e-44 183.0 152 69.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.4e-44 183.0 117 83.8
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 6.7e-44 180.6 110 85.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.5e-43 178.7 112 79.5
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.7e-42 176.0 113 76.1
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.9e-41 170.6 173 59.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.4e-38 162.9 109 75.2
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.4e-38 162.9 117 78.6
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.5e-38 162.2 89 89.9
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.1e-37 159.1 200 50.5
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 6.1e-37 157.5 88 90.9
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.0e-36 156.8 102 81.4
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.4e-35 151.4 89 86.5
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.3e-34 149.8 88 89.8
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.1e-33 146.7 89 86.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.1e-33 146.7 88 87.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 5.3e-33 144.4 88 85.2
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 9.1e-33 143.7 81 88.9
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.0e-32 142.5 85 85.9
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 3.5e-32 141.7 72 94.4
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.7e-31 139.4 73 95.9
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-29 132.5 105 69.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.1e-29 132.5 105 69.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 8.0e-29 130.6 67 94.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 2.6e-27 125.6 109 60.6
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.7e-26 122.9 86 77.9
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.8e-25 119.4 73 87.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 9.1e-25 117.1 73 86.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.2e-24 116.7 83 78.3
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 3.5e-24 115.2 97 54.6
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.7e-24 114.0 70 85.7
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.0e-20 102.1 71 74.6
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 4.4e-19 98.2 104 60.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.3e-15 86.7 47 87.2
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 2.2e-10 69.3 51 72.5
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.4e-09 65.9 57 66.7
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.1e-09 65.5 46 76.1
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.7e-08 62.4 45 75.6
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.7e-08 62.4 45 75.6
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.7e-08 62.4 41 80.5


User provided reference genes

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