Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 1.1e-189 666.4 318 100.0
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 8.0e-132 474.2 316 71.2
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 1.2e-130 470.3 317 71.6
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 7.5e-130 467.6 317 71.3
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 2.2e-129 466.1 339 68.7
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 6.4e-129 464.5 317 68.5
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 7.0e-128 461.1 317 71.0
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 3.5e-127 458.8 317 70.3
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 8.6e-126 454.1 318 68.6
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 4.3e-125 451.8 317 69.7
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 8.1e-124 447.6 318 69.2
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 1.8e-123 446.4 324 68.2
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 1.8e-123 446.4 294 72.8
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 1.2e-122 443.7 319 68.7
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 1.5e-122 443.4 351 65.5
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 2.6e-122 442.6 332 67.5
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 1.7e-121 439.9 299 68.6
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.7e-121 439.9 311 68.8
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 1.7e-121 439.9 322 66.1
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 2.9e-121 439.1 311 68.8
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 6.4e-121 438.0 311 68.5
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 1.1e-120 437.2 307 68.4
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 1.9e-120 436.4 318 66.7
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 1.6e-119 433.3 263 73.8
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 2.7e-119 432.6 302 67.9
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 3.5e-119 432.2 316 64.6
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 7.8e-119 431.0 322 67.1
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 2.3e-118 429.5 280 71.8
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 1.1e-117 427.2 305 65.9
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 1.5e-117 426.8 318 65.7
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 2.5e-117 426.0 286 70.6
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 1.2e-116 423.7 275 70.5
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 8.1e-116 421.0 310 65.8
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 8.1e-116 421.0 313 67.4
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 1.8e-115 419.9 312 63.8
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 6.8e-115 417.9 318 65.4
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 8.9e-115 417.5 281 70.8
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 3.8e-113 412.1 327 63.9
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 4.1e-112 408.7 262 71.4
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 1.6e-111 406.8 304 66.4
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 2.7e-111 406.0 260 70.8
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 6.0e-111 404.8 290 69.0
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 6.0e-111 404.8 279 68.8
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 7.8e-111 404.4 260 70.8
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 6.6e-110 401.4 280 67.1
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 4.3e-109 398.7 289 64.0
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 9.6e-109 397.5 307 61.2
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 9.6e-109 397.5 306 62.4
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 1.2e-108 397.1 243 77.0
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 2.1e-108 396.4 265 68.7
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 8.1e-108 394.4 329 59.6
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 1.1e-107 394.0 301 62.5
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 3.1e-107 392.5 261 69.3
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 5.2e-107 391.7 275 66.5
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 5.2e-107 391.7 307 62.5
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 1.2e-106 390.6 278 66.5
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 1.5e-106 390.2 266 67.7
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 3.8e-105 385.6 281 65.5
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 6.4e-105 384.8 312 60.9
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 8.4e-105 384.4 281 65.5
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 8.4e-105 384.4 315 60.6
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 8.4e-105 384.4 292 63.0
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 1.2e-103 380.6 312 61.5
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 1.0e-102 377.5 277 64.3
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 1.3e-102 377.1 280 63.2
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 1.7e-102 376.7 289 63.0
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 1.7e-102 376.7 274 64.6
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 1.7e-102 376.7 311 59.8
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 8.7e-102 374.4 311 58.8
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 8.7e-102 374.4 311 58.8
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 1.1e-101 374.0 261 65.9
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 1.1e-101 374.0 293 64.2
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 7.3e-101 371.3 261 65.5
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 1.6e-100 370.2 378 51.3
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 1.6e-100 370.2 310 59.0
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 2.8e-100 369.4 310 59.0
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 3.6e-100 369.0 288 61.5
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 1.8e-99 366.7 305 60.0
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 2.2e-97 359.8 291 63.6
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 1.9e-96 356.7 316 57.9
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 2.4e-96 356.3 269 63.2
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 4.2e-96 355.5 261 60.5
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 4.2e-96 355.5 319 57.4
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 5.4e-96 355.1 269 62.5
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 2.1e-92 343.2 345 51.9
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 8.1e-92 341.3 275 58.9
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 6.9e-91 338.2 303 56.4
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 8.4e-89 331.3 303 56.1
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 9.3e-88 327.8 279 59.5
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 1.8e-86 323.6 316 55.4
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 2.3e-86 323.2 263 57.8
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 9.6e-85 317.8 238 63.9
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 1.9e-80 303.5 262 57.3
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 2.5e-80 303.1 175 76.6
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 2.8e-76 289.7 256 55.5
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 2.5e-69 266.5 259 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 5.7e-69 265.4 256 47.7
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 9.7e-69 264.6 179 68.7
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.4e-64 250.8 321 46.7
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 4.1e-59 232.6 265 42.3
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 3.6e-55 219.5 365 39.5
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 7.5e-45 185.3 291 38.1
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 6.3e-36 155.6 146 55.5
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.3e-33 147.9 79 83.5
MELO3C013612.2 Cucumis melo HOM05D006713 ORTHO05D008601 9.8e-13 78.6 66 54.5
MELO3C035062.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.2e-10 71.6 39 79.5
Oeu045818.1 Olea europaea HOM05D006713 ORTHO05D008601 2.1e-10 70.9 107 44.9
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 1.1e-06 58.5 34 73.5
SEGI_34366 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 8.9e-06 55.5 47 48.9


User provided reference genes

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