Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 5.6e-83 310.8 151 100.0
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 2.8e-66 255.4 147 79.6
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 6.9e-65 250.8 147 78.2
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 6.4e-63 244.2 147 77.6
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 1.1e-62 243.4 147 75.5
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 2.4e-62 242.3 147 76.9
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 9.3e-62 240.4 147 76.9
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 1.2e-61 240.0 147 74.8
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 3.5e-61 238.4 147 74.1
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 4.6e-61 238.0 147 73.5
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 2.3e-60 235.7 147 70.1
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 2.3e-60 235.7 134 79.9
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 6.7e-60 234.2 147 70.1
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 6.7e-60 234.2 144 75.0
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 1.1e-59 233.4 147 69.4
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 3.3e-59 231.9 147 70.7
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 7.4e-59 230.7 145 72.4
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 7.4e-59 230.7 147 68.7
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 3.6e-58 228.4 147 70.7
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 6.2e-58 227.6 153 72.5
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 1.8e-57 226.1 148 70.3
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 6.9e-57 224.2 148 69.6
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 7.6e-56 220.7 148 68.9
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 9.9e-56 220.3 145 68.3
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 1.7e-55 219.5 147 69.4
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 8.4e-55 217.2 148 67.6
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 1.4e-54 216.5 148 67.6
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 3.2e-54 215.3 144 68.8
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 3.2e-54 215.3 145 66.9
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 2.7e-53 212.2 147 64.6
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 1.9e-51 206.1 144 65.3
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 6.2e-50 201.1 142 71.1
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 1.4e-49 199.9 145 64.1
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 1.8e-49 199.5 145 63.4
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 6.9e-49 197.6 147 63.3
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 1.5e-48 196.4 147 59.9
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 3.0e-44 182.2 114 72.8
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 4.3e-43 178.3 145 60.7
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 1.2e-40 170.2 148 54.7
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 1.4e-38 163.3 101 74.3
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 1.8e-33 146.4 90 74.4
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 6.5e-15 84.7 149 36.2
Zm00001eb080380 Zea mays HOM05D000197 ORTHO05D000114 1.1e-14 84.0 149 32.2
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 1.9e-14 83.2 149 37.6
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 5.5e-14 81.6 137 31.4
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 7.2e-14 81.3 139 38.8
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.6e-13 80.1 147 36.7
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 2.7e-13 79.3 148 31.8
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 3.6e-13 79.0 144 27.8
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 8.0e-13 77.8 154 35.7
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 1.4e-12 77.0 147 34.7
SGA_v2.0_scaffold8G04238 Striga asiatica HOM05D000197 ORTHO05D000114 1.4e-12 77.0 148 33.1
Nitab4.5_0001474g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 1.8e-12 76.6 149 32.2
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 2.3e-12 76.3 139 37.4
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 3.0e-12 75.9 147 36.7
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 3.0e-12 75.9 148 33.1
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 3.0e-12 75.9 148 33.8
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 4.0e-12 75.5 138 35.5
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 5.2e-12 75.1 147 36.7
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 5.2e-12 75.1 147 36.7
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 5.2e-12 75.1 147 36.7
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 5.2e-12 75.1 147 36.7
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.2e-12 75.1 141 36.2
Os04g0465600 Oryza sativa ssp. japonica HOM05D000197 ORTHO05D000114 6.7e-12 74.7 152 30.9
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 8.8e-12 74.3 152 34.9
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 8.8e-12 74.3 147 36.1
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 1.2e-11 73.9 147 36.1
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 1.5e-11 73.6 144 34.7
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 1.5e-11 73.6 152 35.5
TAR629G0887 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.5e-11 73.6 148 32.4
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 2.0e-11 73.2 139 37.4
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 2.6e-11 72.8 148 34.5
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 2.6e-11 72.8 148 34.5
MD16G1024000 Malus domestica HOM05D000197 ORTHO05D000114 2.6e-11 72.8 139 32.4
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 4.4e-11 72.0 147 35.4
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 4.4e-11 72.0 139 36.0
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 4.4e-11 72.0 148 34.5
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 5.7e-11 71.6 147 34.7
MSTRG.611 Avicennia marina HOM05D000197 ORTHO05D000114 5.7e-11 71.6 148 32.4
Eucgr.G02178 Eucalyptus grandis HOM05D000197 ORTHO05D000114 5.7e-11 71.6 151 28.5
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 5.7e-11 71.6 150 32.7
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 7.5e-11 71.2 147 34.7
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 7.5e-11 71.2 140 33.6
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 9.7e-11 70.9 140 29.3
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.3e-10 70.5 147 34.0
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 1.3e-10 70.5 148 32.4
PGR119G0429 Punica granatum HOM05D000197 ORTHO05D000114 1.3e-10 70.5 151 27.8
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 1.3e-10 70.5 139 35.3
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.7e-10 70.1 147 34.0
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 1.7e-10 70.1 139 33.8
Migut.L01436 Erythranthe guttata HOM05D000197 ORTHO05D000114 2.2e-10 69.7 149 32.2
Cfa009126 Carpinus fangiana HOM05D000197 ORTHO05D000114 2.8e-10 69.3 147 35.4
arahy.Tifrunner.gnm1.ann1.M7WURA Arachis hypogaea HOM05D000197 ORTHO05D000114 3.7e-10 68.9 148 35.1
Haze_12156 Corylus avellana HOM05D000197 ORTHO05D000114 3.7e-10 68.9 147 35.4
Manes.15G130100 Manihot esculenta HOM05D000197 ORTHO05D000114 3.7e-10 68.9 149 28.2
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 3.7e-10 68.9 139 33.8
Atru.chr11.1977 Acer truncatum HOM05D000197 ORTHO05D000114 4.8e-10 68.6 148 32.4
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 4.8e-10 68.6 144 34.0
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 4.8e-10 68.6 147 35.4
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 4.8e-10 68.6 139 32.4
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 6.3e-10 68.2 150 31.3
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 6.3e-10 68.2 140 33.6
arahy.Tifrunner.gnm1.ann1.HV6VTP Arachis hypogaea HOM05D000197 ORTHO05D000114 8.2e-10 67.8 148 35.1
TWI36G1572 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 1.1e-09 67.4 138 34.1
arahy.Tifrunner.gnm1.ann1.9J64GE Arachis hypogaea HOM05D000197 ORTHO05D000114 1.4e-09 67.0 149 32.9
arahy.Tifrunner.gnm1.ann1.LHUD2K Arachis hypogaea HOM05D000197 ORTHO05D000114 1.4e-09 67.0 149 32.2
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 1.4e-09 67.0 128 30.5
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.8e-09 66.6 146 30.8
SalBow2G0185 Salvia bowleyana HOM05D000197 ORTHO05D000114 1.8e-09 66.6 150 32.0
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 3.1e-09 65.9 138 37.0
Migut.E00440 Erythranthe guttata HOM05D000197 ORTHO05D000114 3.1e-09 65.9 149 27.5
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 3.1e-09 65.9 149 34.9
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 3.1e-09 65.9 143 28.7
Nn3g16955 Nelumbo nucifera HOM05D000197 ORTHO05D000114 3.1e-09 65.9 149 28.9
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 4.1e-09 65.5 138 35.5
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 4.1e-09 65.5 135 31.9
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 4.1e-09 65.5 125 32.0
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 4.1e-09 65.5 139 34.5
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 5.3e-09 65.1 148 31.8
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 5.3e-09 65.1 146 28.8
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 5.3e-09 65.1 148 32.4
Aqoxy3G00935 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 7.0e-09 64.7 141 32.6
ECA246G1203 Erigeron canadensis HOM05D000226 ORTHO05D000114 7.0e-09 64.7 123 35.0
Oeu062656.1 Olea europaea HOM05D000197 ORTHO05D000114 9.1e-09 64.3 147 25.2
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 2.7e-08 62.8 149 26.2
arahy.Tifrunner.gnm1.ann1.SKIU1M Arachis hypogaea HOM05D000197 ORTHO05D000114 3.5e-08 62.4 149 29.5
Dinv14414 Davidia involucrata HOM05D000197 ORTHO05D000114 3.5e-08 62.4 147 27.9
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 3.5e-08 62.4 151 29.1
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 4.5e-08 62.0 138 34.1
Psat2g109600 Pisum sativum HOM05D000197 ORTHO05D000114 4.5e-08 62.0 139 31.7
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 5.9e-08 61.6 129 29.5
CiPaw.06G047600 Carya illinoinensis HOM05D000197 ORTHO05D000114 5.9e-08 61.6 131 32.8
SalBow2G1202 Salvia bowleyana HOM05D000197 ORTHO05D000114 5.9e-08 61.6 143 31.5
CiPaw.06G033500 Carya illinoinensis HOM05D000197 ORTHO05D000114 7.7e-08 61.2 137 32.8
CiPaw.06G046600 Carya illinoinensis HOM05D000197 ORTHO05D000114 7.7e-08 61.2 131 32.8
Lj3A1049T59 Lonicera japonica HOM05D000197 ORTHO05D000114 7.7e-08 61.2 139 33.1
TWI75G0119 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 7.7e-08 61.2 130 31.5
PSO384G3017 Papaver somniferum HOM05D000197 ORTHO05D000114 1.3e-07 60.5 133 30.1
PSO407G0401 Papaver somniferum HOM05D000197 ORTHO05D000114 1.3e-07 60.5 106 31.1
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.7e-07 60.1 150 26.0
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.7e-07 60.1 140 26.4
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.7e-07 60.1 140 26.4
RcHm_v2.0_Chr4g0441741 Rosa chinensis HOM05D000197 ORTHO05D000114 2.2e-07 59.7 136 29.4
TAR628G0729 Trochodendron aralioides HOM05D000197 ORTHO05D000114 2.9e-07 59.3 156 28.8
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.8e-07 58.9 129 30.2
GSVIVG01011728001 Vitis vinifera HOM05D000197 ORTHO05D000114 3.8e-07 58.9 143 28.0
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 8.5e-07 57.8 150 26.0
PSO017G6491 Papaver somniferum HOM05D000197 ORTHO05D000114 8.5e-07 57.8 118 32.2
PSO478G3742 Papaver somniferum HOM05D000197 ORTHO05D000114 8.5e-07 57.8 118 32.2
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 8.5e-07 57.8 148 23.0
arahy.Tifrunner.gnm1.ann1.MDNW8J Arachis hypogaea HOM05D000197 ORTHO05D000114 1.1e-06 57.4 147 29.3
A08p28340 Brassica napus HOM05D000197 ORTHO05D000114 1.1e-06 57.4 132 25.8
THA.LOC104822191 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 1.1e-06 57.4 115 34.8
QL05p028199 Quercus lobata HOM05D000197 ORTHO05D000114 1.5e-06 57.0 149 30.2
Haze_10961 Corylus avellana HOM05D000197 ORTHO05D000114 1.9e-06 56.6 135 31.1
Sed0020136 Sechium edule HOM05D000197 ORTHO05D000114 1.9e-06 56.6 144 31.2
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 1.9e-06 56.6 132 26.5
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 1.9e-06 56.6 125 26.4
Aqoxy3G03060 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 2.5e-06 56.2 107 33.6
A07p13480 Brassica napus HOM05D000197 ORTHO05D000114 2.5e-06 56.2 145 32.4
PSO782G5193 Papaver somniferum HOM05D000197 ORTHO05D000114 2.5e-06 56.2 110 36.4
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 2.5e-06 56.2 146 28.8
Hund01084 Selenicereus undatus HOM05D008409 ORTHO05D010483 2.5e-06 56.2 41 63.4
FvH4_4g32760 Fragaria vesca HOM05D000197 ORTHO05D000114 3.2e-06 55.8 136 28.7
FAN12G1963 Fragaria x ananassa HOM05D000197 ORTHO05D000114 3.2e-06 55.8 136 28.7
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 3.2e-06 55.8 115 30.4
Mapoly0034s0105 Marchantia polymorpha HOM05D000322 ORTHO05D000186 3.2e-06 55.8 108 31.5
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 3.2e-06 55.8 105 36.2
PSO596G0062 Papaver somniferum HOM05D000197 ORTHO05D000114 3.2e-06 55.8 137 31.4
COL.COLO4_08129 Corchorus olitorius HOM05D001593 ORTHO05D002007 4.2e-06 55.5 124 28.2
Haze_10959 Corylus avellana HOM05D000197 ORTHO05D000114 4.2e-06 55.5 146 30.1
Gohir.A03G115200 Gossypium hirsutum HOM05D000197 ORTHO05D000114 4.2e-06 55.5 136 25.7
PSO339G2973 Papaver somniferum HOM05D000197 ORTHO05D000114 4.2e-06 55.5 143 28.7
Carub.0002s1764 Capsella rubella HOM05D000197 ORTHO05D000114 5.5e-06 55.1 139 27.3
Haze_10952 Corylus avellana HOM05D000197 ORTHO05D000114 5.5e-06 55.1 146 29.5
FAN17G1064 Fragaria x ananassa HOM05D000197 ORTHO05D000114 5.5e-06 55.1 136 27.9
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 5.5e-06 55.1 91 38.5
PSO063G1267 Papaver somniferum HOM05D000197 ORTHO05D000114 7.2e-06 54.7 108 34.3
RcHm_v2.0_Chr4g0441721 Rosa chinensis HOM05D000197 ORTHO05D000114 7.2e-06 54.7 140 27.1
Actinidia12371 Actinidia chinensis HOM05D000197 ORTHO05D000114 9.4e-06 54.3 152 25.0
MSTRG.2157 Avicennia marina HOM05D000197 ORTHO05D000114 9.4e-06 54.3 149 24.2
PSO423G0115 Papaver somniferum HOM05D000197 ORTHO05D000114 9.4e-06 54.3 137 29.9


User provided reference genes

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