Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 5.8e-216 753.8 353 100.0
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 2.0e-176 622.5 350 79.4
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 1.7e-167 592.8 351 76.6
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.8e-164 582.8 349 75.6
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 3.0e-164 582.0 345 75.4
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 7.5e-163 577.4 350 75.1
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.0e-160 569.3 349 74.5
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 2.7e-160 568.9 349 72.5
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 5.9e-160 567.8 352 72.4
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 1.0e-159 567.0 345 74.2
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.3e-159 566.6 349 73.1
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 1.3e-159 566.6 350 73.1
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 8.6e-159 563.9 349 71.1
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 9.5e-158 560.5 344 72.7
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.5e-155 553.1 351 70.7
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 3.4e-155 552.0 349 69.3
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 9.8e-155 550.4 349 69.6
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 4.9e-154 548.1 351 70.7
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.2e-152 543.5 341 72.7
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 2.7e-152 542.3 354 69.5
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 4.6e-152 541.6 349 69.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.0e-151 540.4 383 65.3
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 5.0e-151 538.1 349 66.8
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 5.0e-151 538.1 352 69.0
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 6.6e-151 537.7 341 71.8
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 8.6e-151 537.3 349 69.6
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.5e-150 536.6 349 68.5
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 9.5e-150 533.9 349 70.2
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 9.5e-150 533.9 349 69.6
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.3e-148 529.3 346 69.1
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 2.3e-148 529.3 347 68.0
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.8e-148 527.7 350 67.1
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.9e-148 527.3 381 64.0
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.5e-147 526.6 346 68.8
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.5e-147 526.6 347 70.3
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 2.0e-147 526.2 350 67.1
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.6e-147 525.8 351 66.4
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 3.4e-147 525.4 350 66.6
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 7.5e-147 524.2 351 66.7
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.9e-145 519.6 350 66.3
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 2.4e-145 519.2 346 68.5
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 3.2e-145 518.8 350 66.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.2e-144 516.9 347 67.1
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.3e-143 512.7 344 66.6
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 2.5e-142 509.2 363 65.3
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 5.6e-142 508.1 349 63.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.6e-141 506.5 350 65.4
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.1e-141 506.1 352 63.9
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.3e-140 502.7 352 63.4
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 2.6e-139 499.2 354 64.4
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.3e-138 496.9 352 62.2
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 2.2e-138 496.1 351 64.4
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.2e-138 496.1 352 62.2
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 6.4e-138 494.6 352 62.8
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.1e-137 493.8 351 64.7
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.9e-137 493.0 352 63.1
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 3.2e-137 492.3 348 63.5
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 7.8e-136 487.6 353 61.5
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 6.6e-135 484.6 352 61.9
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 3.3e-134 482.3 376 58.8
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 4.3e-134 481.9 353 60.9
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 4.3e-134 481.9 353 60.9
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 4.3e-134 481.9 346 63.3
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.0e-132 475.3 359 59.9
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 1.2e-131 473.8 376 57.7
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.2e-131 473.8 332 63.9
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 3.4e-131 472.2 310 67.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.1e-129 467.2 302 68.9
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 3.9e-127 458.8 381 55.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.5e-126 456.1 323 63.2
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 2.1e-125 453.0 351 57.5
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 3.6e-125 452.2 317 66.2
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 4.0e-124 448.7 353 59.5
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 3.8e-122 442.2 295 68.1
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 4.3e-118 428.7 268 75.0
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 2.0e-115 419.9 466 47.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 3.8e-114 415.6 345 56.2
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 4.6e-112 408.7 445 49.2
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 3.9e-111 405.6 285 66.3
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 3.8e-106 389.0 258 69.8
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 8.4e-106 387.9 294 59.9
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 4.8e-101 372.1 249 67.1
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 9.0e-100 367.9 302 60.6
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 2.6e-99 366.3 235 72.3
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 3.4e-99 365.9 289 58.8
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 3.3e-94 349.4 194 75.8
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 1.1e-92 344.4 274 60.2
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 9.0e-92 341.3 340 48.2
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.2e-91 340.9 214 73.4
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-89 334.0 269 58.0
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 7.2e-89 331.6 312 54.2
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 4.6e-88 328.9 263 57.4
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-86 324.3 259 59.5
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 2.8e-77 293.1 165 75.8
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 3.1e-76 289.7 268 51.1
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 5.7e-70 268.9 315 45.1
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.6e-67 260.0 307 44.6
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 2.9e-66 256.5 158 69.6
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 2.5e-65 253.4 158 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.1e-60 238.0 341 34.9
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 4.1e-60 236.1 359 35.9
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 1.7e-53 214.2 147 69.4
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 1.4e-47 194.5 113 77.0
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 6.8e-47 192.2 252 41.7
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.5e-46 191.0 252 41.7
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 5.7e-46 189.1 194 49.5
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.5e-43 179.5 302 33.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 7.3e-41 172.2 140 60.0
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.4e-39 167.9 183 45.9
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.5e-38 162.2 104 69.2
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 3.7e-37 159.8 191 45.5
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 3.9e-34 149.8 77 80.5
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 3.9e-34 149.8 87 74.7
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 2.3e-31 140.6 87 71.3
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 1.7e-29 134.4 382 25.7
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 3.0e-26 123.6 76 69.7
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.5e-25 121.3 125 51.2
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 2.5e-25 120.6 68 69.1
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 2.8e-24 117.1 91 63.7
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 2.6e-22 110.5 63 76.2
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.5e-17 94.7 127 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.2e-16 91.7 93 41.9
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 8.9e-15 85.5 42 81.0
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 2.9e-13 80.5 107 44.9
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 2.3e-10 70.9 54 53.7
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 2.1e-08 64.3 30 83.3


User provided reference genes

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