Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 8.5e-301 1036.2 510 100.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 4.5e-233 811.2 510 78.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 9.9e-233 810.1 510 79.0
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 4.2e-231 804.7 510 78.6
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 6.7e-229 797.3 508 78.0
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.1e-227 792.3 511 77.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.0e-226 788.1 509 77.8
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 7.6e-225 783.9 510 76.3
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.9e-223 779.2 515 75.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 2.4e-223 778.9 510 76.3
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 7.1e-223 777.3 510 75.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 6.0e-222 774.2 510 75.3
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.3e-221 773.1 510 75.5
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.3e-221 772.3 510 75.1
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.0e-221 771.9 510 75.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 5.1e-221 771.2 515 74.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.3e-220 768.5 510 74.5
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.3e-220 768.5 512 75.2
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 4.3e-220 768.1 510 75.9
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.8e-219 765.4 516 73.8
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 6.2e-219 764.2 510 73.5
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 8.2e-219 763.8 510 74.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.4e-218 763.1 510 73.9
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.8e-218 762.7 507 75.3
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.8e-218 762.7 510 74.1
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.9e-218 760.8 510 73.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.6e-217 758.8 549 69.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.4e-217 758.4 510 73.9
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 7.6e-217 757.3 507 73.6
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.6e-217 757.3 510 73.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.0e-216 756.9 510 73.3
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-216 755.7 510 73.3
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.9e-216 754.6 511 73.4
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.9e-216 754.6 511 73.4
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 6.5e-216 754.2 510 73.7
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.1e-215 753.4 511 73.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.1e-215 753.4 510 72.9
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-215 753.4 510 73.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.9e-215 752.7 510 72.9
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.5e-215 752.3 510 72.7
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.2e-215 751.9 511 73.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 3.2e-215 751.9 518 72.4
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 7.1e-215 750.7 510 73.7
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 9.3e-215 750.4 510 73.5
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 9.3e-215 750.4 510 72.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.3e-215 750.4 514 73.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.1e-214 749.2 510 72.7
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.7e-214 748.8 510 72.9
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.7e-214 748.8 509 73.1
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 7.9e-214 747.3 510 72.9
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-213 746.5 514 73.2
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.3e-213 746.5 500 74.2
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-213 745.7 512 73.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.9e-213 745.0 510 72.4
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 3.9e-213 745.0 508 72.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 8.7e-213 743.8 510 72.4
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.3e-212 741.5 512 72.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.7e-212 741.1 493 75.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.1e-210 736.9 501 72.3
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.4e-210 736.5 515 72.0
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.1e-210 735.3 548 68.6
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 4.1e-210 734.9 514 71.0
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.2e-209 733.4 548 68.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-209 733.0 516 69.6
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.6e-209 732.3 515 71.7
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.9e-209 731.1 515 71.5
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.0e-208 730.3 512 72.7
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.2e-208 729.2 516 70.9
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 3.8e-208 728.4 510 71.4
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.5e-208 727.6 511 71.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 8.5e-208 727.2 491 73.1
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.9e-207 726.1 478 75.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.2e-207 724.9 511 70.8
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.6e-206 723.0 502 72.5
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.1e-206 722.6 602 63.0
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 3.6e-206 721.8 474 75.7
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.6e-206 721.5 502 72.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 6.1e-206 721.1 515 68.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 6.1e-206 721.1 515 69.5
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.9e-206 720.7 510 71.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.5e-204 716.5 475 75.4
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.9e-204 716.1 515 69.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 3.3e-204 715.3 514 69.3
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.3e-204 715.3 510 71.4
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.3e-204 715.3 477 74.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.9e-202 707.6 508 70.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 6.9e-202 707.6 514 68.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 5.9e-201 704.5 511 69.5
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.2e-200 702.6 515 68.3
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.9e-200 702.2 452 77.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 5.5e-199 698.0 515 68.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 9.4e-199 697.2 514 68.3
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-197 692.2 507 68.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.5e-196 689.9 500 69.0
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 7.4e-196 687.6 510 68.4
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 9.7e-196 687.2 512 67.0
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.7e-196 687.2 510 69.6
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.7e-196 687.2 510 69.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.7e-195 686.4 515 68.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.7e-195 685.3 527 65.5
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.2e-193 680.2 504 68.1
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.0e-192 677.2 461 73.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 3.2e-191 672.2 513 66.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.2e-191 672.2 535 66.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 4.7e-190 668.3 569 62.7
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 7.9e-190 667.5 452 73.7
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.7e-188 661.4 513 66.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 7.4e-188 661.0 453 73.1
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.1e-186 657.1 512 65.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 9.1e-186 654.1 527 65.3
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.2e-185 653.7 511 66.7
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.5e-185 651.7 589 58.9
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 5.9e-185 651.4 500 66.6
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 8.5e-184 647.5 515 63.1
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.9e-183 646.4 507 63.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 8.0e-182 641.0 515 63.9
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.3e-181 639.4 513 63.9
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 3.0e-181 639.0 512 64.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 6.7e-181 637.9 448 71.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.7e-180 634.0 529 62.4
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.0e-177 626.3 474 68.6
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.7e-176 623.2 510 62.7
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 6.3e-163 578.2 405 69.6
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.9e-160 569.3 405 70.6
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.2e-155 553.1 516 58.7
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.4e-154 549.7 544 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 6.0e-153 545.0 521 55.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.2e-145 520.8 665 47.4
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 8.6e-144 514.6 453 61.4
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.9e-139 498.8 420 59.8
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 3.9e-128 462.6 345 68.1
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 4.3e-127 459.1 446 56.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.1e-117 427.9 297 71.7
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 6.4e-115 418.7 273 74.4
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.9e-111 407.1 279 73.1
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.3e-88 330.5 244 68.0
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.4e-84 316.6 242 63.6
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.5e-82 309.3 213 70.4
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.8e-78 296.2 244 60.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 3.2e-74 283.5 220 67.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.0e-71 274.2 503 39.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.5e-68 263.1 580 31.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.0e-59 235.3 337 40.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.7e-43 181.4 136 66.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 8.9e-40 169.1 106 78.3
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-39 168.3 182 49.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.2e-37 160.6 121 65.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.2e-37 159.1 184 44.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.4e-29 133.3 247 37.7
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-28 132.1 115 54.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.6e-28 131.7 247 37.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 6.0e-28 129.8 67 88.1
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-24 119.0 92 65.2
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.5e-18 95.9 166 30.1
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.2e-15 89.0 115 46.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.9e-14 83.6 73 57.5
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-12 77.8 82 53.7
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.9e-11 73.9 211 27.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.8e-08 65.1 86 46.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 2.4e-08 64.7 134 29.1
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 4.4e-07 60.5 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.4e-07 60.5 111 36.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.9e-06 57.8 36 72.2


User provided reference genes

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