Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 0.0e+00 1169.8 584 100.0
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.2e-301 1039.3 566 86.7
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.0e-301 1038.5 566 86.6
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.7e-301 1036.9 566 86.6
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 9.1e-299 1029.6 566 85.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.1e-296 1022.7 566 86.0
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 8.0e-295 1016.5 566 86.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 4.0e-294 1014.2 586 83.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 6.8e-294 1013.4 591 82.4
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 9.8e-293 1009.6 566 85.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 6.3e-292 1006.9 569 83.5
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.1e-291 1004.6 572 83.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 4.1e-291 1004.2 566 84.8
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.1e-291 1004.2 587 85.2
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 2.0e-290 1001.9 596 80.9
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.7e-290 1001.5 572 83.6
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 5.9e-290 1000.3 568 83.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.7e-290 1000.0 564 83.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.9e-289 998.0 566 83.2
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.9e-289 998.0 566 83.2
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 2.9e-289 998.0 567 84.7
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 6.6e-289 996.9 569 83.3
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.9e-288 995.3 571 83.2
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.9e-288 995.3 566 83.0
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 5.5e-288 993.8 571 82.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 7.2e-288 993.4 567 83.2
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.6e-287 991.1 586 81.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.0e-285 985.3 566 83.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.4e-283 979.2 571 82.3
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 2.4e-283 978.4 567 83.2
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 7.8e-282 973.4 566 82.0
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.0e-281 973.0 576 81.4
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 8.6e-281 969.9 565 82.1
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 5.6e-280 967.2 573 80.6
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.2e-279 966.1 546 82.8
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.4e-278 962.6 564 81.9
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 5.2e-278 960.7 579 79.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.5e-277 959.1 576 79.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.0e-277 958.7 568 80.6
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 4.4e-277 957.6 576 79.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 9.8e-277 956.4 566 80.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 9.8e-277 956.4 567 79.7
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.7e-276 955.7 561 79.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.7e-276 954.5 570 79.8
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 6.4e-276 953.7 545 82.6
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 8.3e-276 953.4 586 77.8
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 3.2e-275 951.4 669 71.0
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.1e-275 951.0 593 76.9
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 5.4e-275 950.7 558 81.9
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 5.4e-275 950.7 558 80.5
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.0e-275 950.3 593 76.7
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.2e-274 949.5 593 76.7
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-274 949.1 588 77.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 1.6e-274 949.1 567 80.4
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.0e-274 948.7 593 76.7
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.7e-274 948.3 570 78.6
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.7e-273 945.7 566 80.2
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.3e-273 945.3 572 79.2
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.3e-273 945.3 570 78.2
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.3e-273 945.3 570 78.1
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.0e-273 944.9 569 79.4
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 3.9e-273 944.5 572 79.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 5.0e-273 944.1 568 78.7
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 4.3e-272 941.0 574 79.3
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 9.5e-272 939.9 569 79.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 9.5e-272 939.9 560 80.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.2e-271 939.5 577 77.5
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.6e-271 939.1 573 79.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.6e-271 939.1 571 77.8
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-271 939.1 565 79.1
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.1e-271 938.7 573 79.4
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.1e-271 938.7 584 77.9
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 2.8e-271 938.3 571 79.3
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 8.0e-271 936.8 584 77.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.1e-270 936.4 591 78.0
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.3e-270 935.3 574 78.0
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 2.3e-270 935.3 591 77.7
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.3e-270 935.3 574 78.9
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.3e-270 935.3 593 75.7
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.1e-270 934.9 591 75.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.2e-269 932.9 575 78.8
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.5e-269 932.6 567 78.0
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.0e-269 932.2 561 79.9
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-269 931.4 572 79.0
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.4e-269 931.0 558 79.7
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 4.4e-269 931.0 588 76.9
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.8e-269 930.6 567 77.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.7e-268 929.1 517 85.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 6.4e-268 927.2 597 75.4
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.4e-267 926.0 570 77.4
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 3.2e-267 924.9 570 76.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.2e-267 923.3 571 77.6
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.1e-266 922.2 570 77.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.5e-266 921.4 547 78.8
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 3.5e-266 921.4 576 75.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.6e-266 921.0 569 77.2
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 4.6e-266 921.0 559 77.6
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 6.0e-266 920.6 539 80.9
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-265 919.5 568 76.9
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 1.7e-265 919.1 569 77.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.3e-265 918.7 594 75.1
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 3.9e-265 917.9 598 74.4
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 5.1e-265 917.5 568 76.8
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 5.1e-265 917.5 570 76.8
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 8.6e-265 916.8 568 76.6
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 8.6e-265 916.8 570 77.0
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.1e-264 916.4 570 77.0
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.9e-264 915.6 519 85.7
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 2.5e-264 915.2 569 77.0
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 2.5e-264 915.2 568 76.9
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.5e-264 915.2 569 76.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.8e-263 911.8 576 75.9
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.4e-262 909.4 586 75.8
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.2e-261 906.4 568 76.9
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.2e-261 906.4 567 77.2
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.1e-259 899.8 604 74.0
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 2.1e-258 895.6 569 78.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.8e-252 874.8 593 72.7
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.4e-251 872.8 574 74.9
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 5.4e-251 870.9 518 80.3
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 8.7e-249 863.6 496 83.3
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 4.0e-246 854.7 904 52.5
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.6e-242 842.8 556 73.2
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.1e-238 828.6 863 52.5
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.1e-238 828.6 544 70.8
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.8e-223 778.9 567 67.9
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.6e-221 772.3 564 67.2
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.1e-214 750.4 585 63.1
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.0e-213 746.1 532 71.8
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 2.3e-209 732.6 401 87.8
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.1e-202 709.5 426 77.0
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.8e-201 706.4 562 59.3
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 5.3e-182 641.7 340 91.8
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.1e-174 615.9 431 72.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 2.0e-165 586.6 421 72.7
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.8e-154 549.7 585 48.4
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.0e-148 529.6 307 86.0
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.5e-139 500.7 442 62.7
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 2.4e-118 430.3 331 60.1
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 9.0e-105 385.2 450 44.4
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.0e-100 370.2 481 42.0
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 5.3e-97 359.4 230 77.8
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 4.5e-96 356.3 513 38.0
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.1e-93 347.4 188 92.0
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.8e-84 317.8 202 69.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.1e-81 307.0 213 71.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 2.8e-74 283.9 411 38.9
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.1e-73 280.4 166 75.3
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.6e-72 278.1 212 62.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.6e-72 278.1 212 62.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 2.0e-67 261.2 172 69.2
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 9.8e-67 258.8 367 37.1
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.6e-53 214.9 226 53.5
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 4.7e-45 186.8 108 87.0
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 2.3e-31 141.4 121 53.7
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.9e-31 140.6 72 94.4
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 9.9e-27 125.9 137 50.4
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.7e-26 125.2 133 51.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.4e-19 100.5 105 56.2
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.6e-15 86.7 44 81.8
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.6e-13 82.0 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.6e-13 82.0 49 71.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 2.4e-12 78.2 48 66.7
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 5.8e-11 73.6 43 72.1
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 4.9e-10 70.5 46 67.4


User provided reference genes

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