Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 5.5e-133 477.6 242 100.0
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.9e-109 399.4 239 82.4
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 2.1e-103 379.4 242 78.5
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 1.9e-101 372.9 241 77.6
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.4e-96 356.7 239 74.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 3.2e-96 355.5 242 71.5
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 2.1e-95 352.8 229 75.5
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.7e-94 349.7 240 72.1
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.1e-93 347.1 213 82.2
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 1.5e-93 346.7 240 70.0
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.5e-93 345.9 248 71.4
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.3e-93 345.5 242 71.1
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 4.3e-93 345.1 242 71.5
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.1e-92 342.8 268 66.0
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.1e-91 340.5 240 71.2
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.0e-90 336.3 229 72.1
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.6e-90 335.9 238 69.7
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 5.8e-90 334.7 240 68.8
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 7.6e-90 334.3 229 71.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.3e-89 333.6 232 70.7
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 2.2e-89 332.8 242 66.5
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.9e-89 331.6 242 67.4
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.4e-88 330.1 236 67.8
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 3.2e-88 328.9 239 68.2
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.2e-88 328.9 239 69.0
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.2e-88 328.6 240 69.2
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 2.1e-87 326.2 237 68.4
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 3.5e-87 325.5 240 68.3
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.7e-86 323.2 238 67.2
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.7e-86 323.2 240 67.9
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 3.0e-86 322.4 230 69.1
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 3.0e-86 322.4 230 69.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 5.1e-86 321.6 229 69.4
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 5.1e-86 321.6 238 65.5
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.1e-85 320.5 240 65.4
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.1e-85 320.5 236 66.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.9e-85 319.7 233 67.0
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 2.5e-85 319.3 242 65.7
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 3.3e-85 318.9 241 66.8
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 4.3e-85 318.5 240 64.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 7.3e-85 317.8 239 63.2
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 7.3e-85 317.8 235 66.4
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 7.3e-85 317.8 230 68.3
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 1.6e-84 316.6 226 67.7
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 2.1e-84 316.2 224 66.5
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 2.1e-84 316.2 242 64.0
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 2.8e-84 315.8 226 67.7
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 8.1e-84 314.3 243 66.3
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 8.1e-84 314.3 243 66.3
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.1e-83 313.9 238 64.7
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 3.1e-83 312.4 234 68.4
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 5.3e-83 311.6 238 64.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.2e-82 310.5 226 67.7
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 1.5e-82 310.1 242 63.2
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.5e-82 310.1 241 65.6
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 3.4e-82 308.9 239 62.8
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 9.9e-82 307.4 240 62.9
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 6.4e-81 304.7 240 63.3
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 8.4e-81 304.3 240 62.5
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 8.4e-81 304.3 240 62.5
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 8.4e-81 304.3 235 65.1
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.1e-80 303.9 240 62.5
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 1.9e-80 303.1 236 65.7
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 2.4e-80 302.8 239 61.5
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 3.2e-80 302.4 240 62.1
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 3.2e-80 302.4 240 62.1
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 3.2e-80 302.4 238 62.2
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.2e-80 302.0 239 61.1
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 2.1e-79 299.7 239 60.3
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.6e-79 298.5 213 69.0
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.0e-78 297.4 213 69.0
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.3e-78 297.0 238 60.9
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 6.6e-78 294.7 228 65.4
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 9.6e-77 290.8 213 67.6
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 4.0e-75 285.4 199 70.9
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 5.3e-75 285.0 196 73.5
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 1.3e-73 280.4 226 61.5
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.1e-72 277.3 212 67.0
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.2e-72 275.8 226 58.8
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 6.0e-71 271.6 226 58.4
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 7.9e-71 271.2 199 68.8
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 3.0e-70 269.2 214 65.0
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 3.3e-69 265.8 211 63.5
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 5.6e-69 265.0 211 65.4
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 1.3e-68 263.8 226 56.6
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 2.8e-68 262.7 228 57.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 3.8e-65 252.3 190 66.8
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 3.2e-64 249.2 239 55.2
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.3e-60 237.3 220 50.9
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 2.0e-58 229.9 165 68.5
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 2.6e-58 229.6 175 64.6
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 7.6e-58 228.0 179 63.7
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.2e-56 222.6 182 63.7
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 9.0e-51 204.5 239 48.1
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.9e-50 201.8 181 56.9
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.6e-47 193.7 176 61.9
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 8.8e-46 188.0 222 44.6
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.8e-43 180.3 133 66.2
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.6e-42 176.4 128 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 3.2e-40 169.5 236 39.0
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 9.4e-40 167.9 134 60.4
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.4e-37 159.1 222 39.2
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.9e-32 143.7 110 63.6
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 8.0e-31 138.3 104 61.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.5e-29 134.0 127 55.9
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.2e-24 115.9 194 34.0
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 5.5e-24 115.5 230 30.9
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 4.0e-22 109.4 205 27.8
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 4.4e-21 105.9 111 53.2
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 5.4e-19 99.0 76 60.5
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 2.5e-16 90.1 204 29.9
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 6.1e-15 85.5 115 40.0
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.5e-13 78.6 224 26.8
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 3.7e-12 76.3 68 58.8
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.3e-09 67.8 201 26.9
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.3e-09 67.8 211 29.4
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 3.8e-09 66.2 221 28.5
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.3e-08 63.2 201 25.9
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 3.3e-08 63.2 201 25.9
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 4.3e-08 62.8 218 24.3
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 4.3e-08 62.8 54 61.1
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.6e-08 62.4 221 28.1
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 7.3e-08 62.0 203 23.6
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.6e-07 60.8 218 23.4
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 6.1e-07 58.9 234 24.4
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 8.0e-07 58.5 218 22.9
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 8.0e-07 58.5 226 24.3
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.4e-06 57.8 186 26.3
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.4e-06 57.8 189 24.3
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 1.4e-06 57.8 240 22.5
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 1.8e-06 57.4 234 23.5
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 4.0e-06 56.2 218 22.9
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 6.8e-06 55.5 234 23.9
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 6.8e-06 55.5 237 22.4
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 6.8e-06 55.5 218 22.9
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 8.9e-06 55.1 233 24.0


User provided reference genes

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