Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 1.2e-32 142.5 69 100.0
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 3.4e-27 124.4 69 87.0
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.3e-26 122.5 68 85.3
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.7e-26 122.1 68 82.4
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 4.9e-26 120.6 70 84.3
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 6.4e-26 120.2 68 82.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.4e-26 120.2 69 81.2
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 6.4e-26 120.2 71 83.1
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 8.4e-26 119.8 68 79.4
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.1e-25 119.4 69 81.2
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.1e-25 119.4 69 81.2
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.1e-25 119.4 69 81.2
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.1e-25 119.4 68 79.4
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.4e-25 119.0 68 80.9
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.4e-25 119.0 69 79.7
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.4e-25 119.0 68 79.4
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 2.4e-25 118.2 69 81.2
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 2.4e-25 118.2 69 79.7
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.2e-25 117.9 69 79.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 3.2e-25 117.9 67 80.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.2e-25 117.9 68 80.9
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 3.2e-25 117.9 64 82.8
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 4.1e-25 117.5 67 77.6
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 4.1e-25 117.5 67 77.6
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 4.1e-25 117.5 68 79.4
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 4.1e-25 117.5 69 79.7
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 4.1e-25 117.5 69 79.7
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 4.1e-25 117.5 66 81.8
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.1e-25 117.5 64 84.4
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.1e-25 117.5 64 84.4
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 5.4e-25 117.1 67 77.6
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 5.4e-25 117.1 67 77.6
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 5.4e-25 117.1 67 77.6
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 5.4e-25 117.1 68 79.4
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 5.4e-25 117.1 64 84.4
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 7.1e-25 116.7 69 79.7
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 7.1e-25 116.7 65 84.6
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 7.1e-25 116.7 69 79.7
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 7.1e-25 116.7 68 79.4
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 9.2e-25 116.3 68 77.9
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 9.2e-25 116.3 68 77.9
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.2e-24 115.9 65 83.1
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.2e-24 115.9 69 78.3
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.2e-24 115.9 69 78.3
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.2e-24 115.9 68 76.5
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.2e-24 115.9 64 82.8
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.6e-24 115.5 69 79.7
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 2.1e-24 115.2 69 78.3
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 2.1e-24 115.2 64 79.7
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 3.5e-24 114.4 66 75.8
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.5e-24 114.4 69 78.3
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.6e-24 114.0 64 78.1
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 4.6e-24 114.0 64 78.1
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 4.6e-24 114.0 64 78.1
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 4.6e-24 114.0 65 83.1
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 81.2
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.0e-23 112.8 64 78.1
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.0e-23 112.8 64 78.1
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.0e-23 112.8 64 78.1
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.3e-23 112.5 65 78.5
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 1.3e-23 112.5 69 79.7
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.7e-23 112.1 69 75.4
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.3e-23 111.7 62 80.6
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 76.6
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 76.6
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.3e-23 111.7 64 78.1
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.3e-23 111.7 62 82.3
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 3.9e-23 110.9 69 75.4
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 5.1e-23 110.5 58 82.8
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 5.1e-23 110.5 69 75.4
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 5.1e-23 110.5 59 86.4
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 8.6e-23 109.8 64 76.6
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 61 80.3
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.1e-22 109.4 64 79.7
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.1e-22 109.4 58 81.0
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.9e-22 108.6 64 76.6
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.9e-22 108.6 66 77.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.9e-22 108.6 66 77.3
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.5e-22 108.2 58 81.0
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 5.6e-22 107.1 65 75.4
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 73.5
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 73.5
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 70.6
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 7.3e-22 106.7 66 77.3
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 9.6e-22 106.3 65 75.4
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 1.2e-21 105.9 66 74.2
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.2e-21 105.9 68 69.1
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.6e-21 105.5 65 75.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.1e-21 105.1 58 79.3
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.8e-21 104.8 65 75.4
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 72.7
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 4.7e-21 104.0 71 71.8
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 8.1e-21 103.2 62 77.4
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.1e-21 103.2 71 71.8
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 8.1e-21 103.2 71 71.8
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 5.2e-20 100.5 57 87.7
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 6.9e-20 100.1 55 83.6
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 2.6e-19 98.2 56 76.8
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 3.4e-19 97.8 65 70.8
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 4.4e-19 97.4 65 72.3
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 2.9e-18 94.7 58 72.4
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 3.8e-18 94.4 65 67.7
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 8.4e-18 93.2 50 84.0
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 6.0e-16 87.0 52 75.0
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 8.4e-10 66.6 49 65.3
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 6.7e-07 57.0 40 60.0
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 6.7e-07 57.0 58 43.1


User provided reference genes

Program Settings