Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 5.8e-220 767.3 404 100.0
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 8.3e-150 534.3 393 70.7
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 1.2e-148 530.4 424 68.4
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 5.0e-147 525.0 402 67.7
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 1.2e-145 520.4 397 66.5
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 3.1e-144 515.8 404 66.1
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 5.2e-144 515.0 395 68.1
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 2.6e-143 512.7 404 67.8
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 5.8e-143 511.5 404 64.9
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 4.9e-142 508.4 404 64.9
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 2.4e-141 506.1 404 64.9
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 7.1e-141 504.6 394 66.5
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 4.3e-138 495.4 402 63.2
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 4.0e-136 488.8 400 64.5
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 1.5e-135 486.9 405 62.0
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 7.6e-135 484.6 394 63.7
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 1.3e-134 483.8 394 63.7
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 1.7e-134 483.4 361 68.1
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 1.7e-134 483.4 401 63.6
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 3.8e-134 482.3 405 64.9
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 8.4e-134 481.1 400 62.8
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 3.5e-132 475.7 401 61.6
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 1.3e-131 473.8 351 68.1
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 1.2e-129 467.2 394 60.9
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 2.1e-129 466.5 394 60.2
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 1.2e-127 460.7 394 59.9
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 1.2e-127 460.7 400 58.8
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 1.2e-127 460.7 442 56.8
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 1.2e-127 460.7 442 56.6
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 1.4e-125 453.8 368 63.9
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 1.9e-125 453.4 406 59.6
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 9.3e-125 451.1 401 58.9
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 1.2e-124 450.7 401 60.1
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 2.1e-124 449.9 401 58.9
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 4.6e-124 448.7 402 59.0
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 6.0e-124 448.4 407 57.7
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 3.0e-123 446.0 401 58.9
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 3.9e-123 445.7 366 62.0
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 3.9e-123 445.7 396 58.3
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 1.5e-122 443.7 403 58.3
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 1.5e-122 443.7 408 59.6
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 1.9e-122 443.4 377 59.7
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 2.5e-122 443.0 366 63.7
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 2.5e-122 443.0 400 60.0
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 9.6e-122 441.0 400 60.0
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 1.6e-121 440.3 472 52.8
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 2.1e-121 439.9 396 57.6
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 2.8e-121 439.5 400 59.5
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 2.8e-121 439.5 332 66.3
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 4.8e-121 438.7 399 57.4
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 6.2e-121 438.3 397 58.9
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 8.1e-121 438.0 400 59.5
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 1.1e-120 437.6 395 59.7
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 1.8e-120 436.8 396 57.1
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 4.0e-120 435.6 352 61.4
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 6.9e-120 434.9 396 59.3
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 1.5e-119 433.7 394 57.1
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 2.0e-119 433.3 330 65.5
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 3.4e-119 432.6 402 57.5
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 5.8e-119 431.8 413 58.1
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 7.6e-119 431.4 413 57.9
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 7.9e-116 421.4 401 55.4
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.3e-115 420.6 315 67.3
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 1.1e-114 417.5 363 60.1
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 2.5e-114 416.4 397 56.7
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 2.5e-114 416.4 396 55.3
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 5.6e-114 415.2 406 57.4
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 2.0e-111 406.8 392 56.1
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 4.2e-101 372.5 437 49.4
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 6.7e-99 365.2 351 53.8
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 7.6e-95 351.7 397 51.4
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.6e-92 344.0 279 65.6
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.8e-91 340.5 280 63.9
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 1.5e-90 337.4 412 51.2
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 5.0e-86 322.4 239 73.6
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 2.5e-85 320.1 289 57.8
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 1.8e-83 313.9 325 53.8
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 2.9e-78 296.6 348 43.1
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 7.2e-77 292.0 299 53.5
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 1.0e-75 288.1 400 43.2
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 3.8e-70 269.6 251 55.4
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 1.3e-65 254.6 323 45.2
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 4.0e-59 233.0 401 39.9
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 7.0e-56 222.2 242 50.0
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 4.5e-55 219.5 167 59.9
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 1.9e-53 214.2 165 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 6.1e-52 209.1 372 34.7
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 6.8e-43 179.1 219 51.1
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 1.4e-40 171.4 304 34.9
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 1.8e-35 154.5 293 32.4
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 1.2e-31 141.7 293 33.4
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 3.5e-31 140.2 126 54.8
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 1.9e-24 117.9 91 63.7
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 1.6e-23 114.8 83 69.9
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 4.6e-23 113.2 94 58.5
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 1.4e-11 75.1 67 55.2
Cfa025227 Carpinus fangiana HOM05D007498 ORTHO05D009384 6.4e-09 66.2 300 25.3
Cre07.g355550 Chlamydomonas reinhardtii HOM05D024201 ORTHO05D009384 1.1e-08 65.5 319 22.3
BcaB06g26853 Brassica carinata HOM05D007498 ORTHO05D009384 9.3e-08 62.4 149 34.9


User provided reference genes

Program Settings