Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G067700 Manihot esculenta HOM05D000913 ORTHO05D000687 2.7e-63 245.4 141 100.0
MSTRG.15029 Avicennia marina HOM05D000913 ORTHO05D000687 2.4e-11 72.8 137 48.9
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.5e-10 68.6 143 37.8
MSTRG.15033 Avicennia marina HOM05D000913 ORTHO05D000687 5.9e-10 68.2 84 51.2
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.3e-09 67.0 143 37.8
Os04g0469000 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 1.7e-09 66.6 150 42.7
Zm00001eb080130 Zea mays HOM05D000913 ORTHO05D000687 2.2e-09 66.2 91 45.1
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 3.8e-09 65.5 88 45.5
MSTRG.15032 Avicennia marina HOM05D000913 ORTHO05D000687 6.5e-09 64.7 86 44.2
Gohir.A07G162700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.5e-09 64.7 143 37.1
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 8.5e-09 64.3 89 47.2
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 8.5e-09 64.3 93 44.1
Manes.13G059400 Manihot esculenta HOM05D000913 ORTHO05D000687 1.5e-08 63.5 99 45.5
Potri.014G171500 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.5e-08 63.5 91 45.1
Zm00001eb080210 Zea mays HOM05D000913 ORTHO05D000687 1.5e-08 63.5 89 42.7
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 2.5e-08 62.8 91 45.1
Duzib268G1294 Durio zibethinus HOM05D000913 ORTHO05D000687 3.2e-08 62.4 143 37.1
Ciclev10018068m.g Citrus clementina HOM05D000913 ORTHO05D000687 4.2e-08 62.0 58 63.8
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 4.2e-08 62.0 90 43.3
TAR626G1783 Trochodendron aralioides HOM05D000913 ORTHO05D000687 5.5e-08 61.6 87 47.1
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 7.2e-08 61.2 90 45.6
TAR626G0368 Trochodendron aralioides HOM05D000913 ORTHO05D000687 7.2e-08 61.2 91 45.1
Oeu049450.1 Olea europaea HOM05D000913 ORTHO05D000687 9.4e-08 60.8 83 44.6
Actinidia12348 Actinidia chinensis HOM05D000913 ORTHO05D000687 1.2e-07 60.5 86 46.5
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.2e-07 60.5 96 43.8
Oeu049442.1 Olea europaea HOM05D000913 ORTHO05D000687 1.2e-07 60.5 87 42.5
Zm00001eb080170 Zea mays HOM05D000913 ORTHO05D000687 1.2e-07 60.5 87 43.7
Cc05_g09770 Coffea canephora HOM05D000913 ORTHO05D000687 1.6e-07 60.1 88 44.3
Potri.009G048100 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.6e-07 60.1 91 46.2
AL8G14310 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 2.1e-07 59.7 63 52.4
CiPaw.10G023100 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.1e-07 59.7 98 41.8
FAN09G0650 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.1e-07 59.7 143 37.1
Nn1g07704 Nelumbo nucifera HOM05D000913 ORTHO05D000687 2.1e-07 59.7 90 43.3
Prupe.4G234700 Prunus persica HOM05D000913 ORTHO05D000687 2.1e-07 59.7 83 49.4
SalBow6G0242 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.1e-07 59.7 86 46.5
SalBow8G2786 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.1e-07 59.7 86 46.5
Zm00001eb080150 Zea mays HOM05D000913 ORTHO05D000687 2.1e-07 59.7 63 54.0
Potri.009G048400 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.7e-07 59.3 91 46.2
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.6e-07 58.9 88 43.2
FAN14G2134 Fragaria x ananassa HOM05D000913 ORTHO05D000687 3.6e-07 58.9 90 45.6
Manes.12G067600 Manihot esculenta HOM05D000913 ORTHO05D000687 3.6e-07 58.9 80 46.2
Medtr3g082210 Medicago truncatula HOM05D000913 ORTHO05D000687 3.6e-07 58.9 82 47.6
Potri.014G171300 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.6e-07 58.9 91 44.0
Atru.chr1.4051 Acer truncatum HOM05D000913 ORTHO05D000687 4.7e-07 58.5 81 48.1
AT3G07600 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 4.7e-07 58.5 63 52.4
BolC1t05541H Brassica oleracea HOM05D000191 ORTHO05D000122 4.7e-07 58.5 88 42.0
BraA01t04371Z Brassica rapa HOM05D000191 ORTHO05D000122 4.7e-07 58.5 88 42.0
Manes.13G059300 Manihot esculenta HOM05D000913 ORTHO05D000687 4.7e-07 58.5 94 42.6
SalBow8G5506 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.7e-07 58.5 60 53.3
Ca_27958_v3 Cicer arietinum L. HOM05D000913 ORTHO05D000687 6.1e-07 58.2 87 43.7
Ciclev10017259m.g Citrus clementina HOM05D000913 ORTHO05D000687 6.1e-07 58.2 60 58.3
Cc05_g09760 Coffea canephora HOM05D000913 ORTHO05D000687 6.1e-07 58.2 88 43.2
SalBow5G0011 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.1e-07 58.2 82 46.3
SalBow5G4967 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.1e-07 58.2 82 46.3
AL3G18960 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 8.0e-07 57.8 63 50.8
FAN02G3220 Fragaria x ananassa HOM05D000913 ORTHO05D000687 8.0e-07 57.8 140 37.1
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 8.0e-07 57.8 92 41.3
Manes.13G059366 Manihot esculenta HOM05D000913 ORTHO05D000687 8.0e-07 57.8 94 41.5
Sc11g0006740 Simmondsia chinensis HOM05D000913 ORTHO05D000687 8.0e-07 57.8 89 46.1
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 8.0e-07 57.8 84 42.9
Atru.chr1.4053 Acer truncatum HOM05D000913 ORTHO05D000687 1.0e-06 57.4 60 56.7
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 1.0e-06 57.4 88 45.5
BcaB03g14690 Brassica carinata HOM05D000913 ORTHO05D000687 1.0e-06 57.4 85 42.4
BcaC01g04273 Brassica carinata HOM05D000913 ORTHO05D000687 1.0e-06 57.4 63 52.4
A03p35370 Brassica napus HOM05D000913 ORTHO05D000687 1.0e-06 57.4 63 52.4
C03p42980 Brassica napus HOM05D000913 ORTHO05D000687 1.0e-06 57.4 63 52.4
BolC3t16566H Brassica oleracea HOM05D000913 ORTHO05D000687 1.0e-06 57.4 63 52.4
BraA03t12715Z Brassica rapa HOM05D000913 ORTHO05D000687 1.0e-06 57.4 63 52.4
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 1.0e-06 57.4 88 43.2
FvH4_6g40280 Fragaria vesca HOM05D000913 ORTHO05D000687 1.0e-06 57.4 90 44.4
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.0e-06 57.4 91 44.0
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 1.4e-06 57.0 86 45.3
BcaB04g21280 Brassica carinata HOM05D000913 ORTHO05D000687 1.4e-06 57.0 89 40.4
Ciclev10017001m.g Citrus clementina HOM05D000913 ORTHO05D000687 1.4e-06 57.0 80 48.8
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.4e-06 57.0 150 36.0
Zm00001eb080180 Zea mays HOM05D000913 ORTHO05D000687 1.4e-06 57.0 84 44.0
Aqoxy7G02045 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.8e-06 56.6 88 43.2
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.8e-06 56.6 89 46.1
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.8e-06 56.6 150 36.0
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.8e-06 56.6 91 44.0
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.8e-06 56.6 89 48.3
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.8e-06 56.6 91 42.9
Sabra14G0130500 Salix brachista HOM05D000913 ORTHO05D000687 1.8e-06 56.6 61 55.7
Thecc.06G222100 Theobroma cacao HOM05D000056 ORTHO05D019100 1.8e-06 56.6 93 40.9
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 1.8e-06 56.6 91 42.9
A05p40590 Brassica napus HOM05D000913 ORTHO05D000687 2.3e-06 56.2 63 50.8
BraA05t22790Z Brassica rapa HOM05D000913 ORTHO05D000687 2.3e-06 56.2 63 50.8
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 2.3e-06 56.2 86 44.2
Thhalv10021695m.g Eutrema salsugineum HOM05D000913 ORTHO05D000687 2.3e-06 56.2 63 49.2
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.3e-06 56.2 88 38.6
Zm00001eb424580 Zea mays HOM05D000913 ORTHO05D000687 2.3e-06 56.2 63 54.0
DCAR_015686 Daucus carota HOM05D000913 ORTHO05D000687 3.0e-06 55.8 67 52.2
Migut.M00531 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.0e-06 55.8 87 44.8
Migut.M00555 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.0e-06 55.8 87 44.8
Migut.M00556 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.0e-06 55.8 87 44.8
MD11G1204600 Malus domestica HOM05D000913 ORTHO05D000687 3.0e-06 55.8 84 47.6
Potri.009G048300 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.0e-06 55.8 88 43.2
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 3.0e-06 55.8 87 43.7
DCAR_019660 Daucus carota HOM05D000913 ORTHO05D000687 4.0e-06 55.5 92 44.6
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 4.0e-06 55.5 135 41.5
Gohir.D11G154000 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.0e-06 55.5 91 42.9
Gorai.007G164100 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.0e-06 55.5 91 42.9
Nitab4.5_0000134g0080 Nicotiana tabacum HOM05D000913 ORTHO05D000687 4.0e-06 55.5 84 41.7
Psat1g171760 Pisum sativum HOM05D000913 ORTHO05D000687 4.0e-06 55.5 85 41.2
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 4.0e-06 55.5 88 43.2
Carub.0003s0717 Capsella rubella HOM05D000913 ORTHO05D000687 5.2e-06 55.1 128 39.8
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.2e-06 55.1 91 42.9
Os04g0464100 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 5.2e-06 55.1 150 36.7
Os04g0469300 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 5.2e-06 55.1 87 41.4
RcHm_v2.0_Chr2g0155451 Rosa chinensis HOM05D000913 ORTHO05D000687 5.2e-06 55.1 140 39.3
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 5.2e-06 55.1 93 41.9
Aa31LG5G18190 Aethionema arabicum HOM05D000913 ORTHO05D000687 6.7e-06 54.7 62 53.2
CARHR082300 Cardamine hirsuta HOM05D000913 ORTHO05D000687 6.7e-06 54.7 117 46.2
FAN16G3426 Fragaria x ananassa HOM05D000913 ORTHO05D000687 6.7e-06 54.7 90 38.9
Gohir.A11G147300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.7e-06 54.7 87 43.7
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 6.7e-06 54.7 93 40.9
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.7e-06 54.7 90 42.2
SGA_v2.0_scaffold4G02124 Striga asiatica HOM05D000913 ORTHO05D000687 6.7e-06 54.7 87 44.8
GSVIVG01014795001 Vitis vinifera HOM05D000913 ORTHO05D000687 6.7e-06 54.7 74 47.3
AT5G48290 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 8.8e-06 54.3 63 49.2
Duzib138G1058 Durio zibethinus HOM05D000913 ORTHO05D000687 8.8e-06 54.3 84 42.9
FvH4_3g42060 Fragaria vesca HOM05D000913 ORTHO05D000687 8.8e-06 54.3 90 38.9
FAN05G2837 Fragaria x ananassa HOM05D000913 ORTHO05D000687 8.8e-06 54.3 90 43.3
FAN11G3382 Fragaria x ananassa HOM05D000913 ORTHO05D000687 8.8e-06 54.3 89 39.3
Glyma.07G098500 Glycine max HOM05D000913 ORTHO05D000687 8.8e-06 54.3 141 39.0
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 8.8e-06 54.3 91 44.0
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 8.8e-06 54.3 136 33.8
RcHm_v2.0_Chr2g0155471 Rosa chinensis HOM05D000913 ORTHO05D000687 8.8e-06 54.3 87 42.5
RcHm_v2.0_Chr5g0042661 Rosa chinensis HOM05D000913 ORTHO05D000687 8.8e-06 54.3 89 44.9
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 8.8e-06 54.3 91 41.8
SalBow8G4274 Salvia bowleyana HOM05D000913 ORTHO05D000687 8.8e-06 54.3 61 52.5
SalBow8G4609 Salvia bowleyana HOM05D000913 ORTHO05D000687 8.8e-06 54.3 61 52.5


User provided reference genes

Program Settings