Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.9e-56 222.2 108 100.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.9e-56 222.2 108 100.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 7.6e-42 173.7 114 76.3
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 9.0e-35 150.2 113 73.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.4e-32 142.9 113 69.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.3e-30 135.6 114 69.3
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.7e-28 129.4 113 64.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.8e-28 127.9 112 60.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 8.2e-28 127.1 112 62.5
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.8e-27 125.9 108 63.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.4e-27 125.6 124 55.6
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.3e-27 124.4 108 62.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.9e-27 124.0 112 60.7
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.9e-27 124.0 112 60.7
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.9e-27 124.0 112 60.7
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 6.9e-27 124.0 120 56.7
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 4.5e-26 121.3 110 60.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.2e-25 119.0 112 58.0
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.8e-25 118.2 113 58.4
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.0e-25 117.9 108 57.4
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.0e-25 117.9 108 57.4
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 6.5e-25 117.5 115 57.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.5e-25 117.1 109 57.8
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.5e-25 117.1 109 58.7
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 8.5e-25 117.1 110 58.2
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.9e-24 115.9 109 57.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.2e-24 115.2 112 56.2
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.2e-24 115.2 111 56.8
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 4.2e-24 114.8 108 60.2
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 7.2e-24 114.0 108 58.3
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.6e-23 112.8 108 56.5
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.6e-23 112.8 113 58.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.1e-23 112.5 114 55.3
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.6e-23 111.7 108 56.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.6e-23 111.7 113 55.8
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.6e-23 111.7 127 50.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.7e-23 111.3 114 55.3
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.1e-23 110.9 114 54.4
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.1e-23 110.9 114 54.4
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 6.1e-23 110.9 114 57.0
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.3e-22 109.0 113 54.9
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.0e-22 108.6 110 58.2
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.9e-22 108.2 110 55.5
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.9e-22 108.2 110 55.5
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 57.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.9e-22 108.2 108 57.4
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 5.1e-22 107.8 111 55.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 6.7e-22 107.5 111 60.4
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 6.7e-22 107.5 110 53.6
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.5e-21 106.3 111 55.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.0e-21 105.9 109 57.8
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.6e-21 105.5 127 49.6
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.6e-21 105.5 114 55.3
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.4e-21 104.8 108 53.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 7.4e-21 104.0 109 54.1
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 9.7e-21 103.6 111 54.1
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 9.7e-21 103.6 107 56.1
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 9.7e-21 103.6 114 52.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.8e-20 102.1 104 54.8
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 4.8e-20 101.3 102 54.9
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.2e-20 100.5 110 56.4
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-19 100.1 113 52.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.4e-19 99.8 111 51.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.4e-19 99.8 108 53.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-19 99.8 114 50.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.4e-19 99.0 109 55.0
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 3.1e-19 98.6 117 50.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 4.1e-19 98.2 106 52.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 4.1e-19 98.2 110 50.0
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 5.3e-19 97.8 99 55.6
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.9e-19 97.4 114 51.8
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-18 96.7 119 51.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.0e-18 95.9 110 52.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.0e-18 95.9 100 54.0
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.6e-18 95.5 112 52.7
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 5.9e-18 94.4 108 50.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 7.7e-18 94.0 85 64.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.7e-18 94.0 98 53.1
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.3e-17 93.2 98 53.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.3e-17 93.2 93 59.1
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-17 92.8 99 52.5
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.7e-17 92.8 92 58.7
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.9e-17 92.0 106 50.9
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.9e-17 92.0 113 48.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.1e-16 90.1 93 53.8
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.5e-16 89.0 108 49.1
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.5e-16 89.0 113 44.2
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.2e-16 88.6 113 47.8
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.5e-16 87.8 117 43.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.2e-16 87.4 117 43.6
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-15 86.7 115 46.1
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.6e-15 86.3 117 45.3
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.1e-15 85.9 108 48.1
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.1e-15 85.9 94 52.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.1e-15 85.9 116 46.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.1e-15 85.9 113 44.2
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.7e-15 85.5 101 52.5
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.7e-15 85.5 108 47.2
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.6e-15 85.1 108 46.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.6e-15 85.1 108 46.3
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.6e-15 85.1 102 52.0
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 4.7e-15 84.7 108 47.2
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.7e-15 84.7 97 49.5
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-15 84.0 98 50.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-15 84.0 109 47.7
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-14 83.6 108 45.4
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.4e-14 83.2 108 46.3
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.4e-14 83.2 108 45.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.8e-14 82.8 110 44.5
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.8e-14 82.8 93 54.8
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.8e-14 82.8 113 43.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.0e-14 82.0 108 45.4
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.0e-14 82.0 111 42.3
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.9e-14 81.6 110 42.7
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 6.7e-14 80.9 108 45.4
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 8.8e-14 80.5 108 45.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 8.8e-14 80.5 108 45.4
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 8.8e-14 80.5 113 43.4
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.8e-14 80.5 109 45.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.1e-13 80.1 103 45.6
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-13 80.1 108 45.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-13 80.1 108 45.4
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.1e-13 80.1 110 42.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.3e-13 78.6 108 43.5
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.4e-13 78.2 113 44.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 7.4e-13 77.4 87 48.3
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 9.7e-13 77.0 112 43.8
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.8e-12 74.7 108 41.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.2e-12 73.9 113 42.5
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.4e-11 72.4 108 42.6
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 3.1e-11 72.0 109 41.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 5.3e-11 71.2 98 44.9
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.0e-10 69.3 99 42.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.6e-10 68.9 96 43.8
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.5e-10 68.6 115 39.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.0e-09 67.0 98 41.8
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.9e-09 65.5 118 39.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.9e-09 65.5 93 46.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 8.5e-09 63.9 63 49.2
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.1e-08 63.5 114 39.5
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 2.5e-08 62.4 57 57.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.2e-08 61.6 105 39.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 5.5e-08 61.2 80 46.2
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 7.2e-08 60.8 104 41.3
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.8e-06 53.9 93 38.7


User provided reference genes

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